Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g18r
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0259 - 1996427-1998772                                           31   0.98 
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427...    30   2.3  
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649     29   3.0  
06_01_1082 - 8847795-8848033,8848511-8848724                           28   6.9  
05_03_0469 + 14439472-14440905                                         28   6.9  
04_04_0806 - 28186486-28186701,28187047-28187341,28189800-281899...    28   6.9  
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924...    28   6.9  
08_01_0692 + 6121443-6122266,6122812-6124798                           28   9.1  
01_03_0233 + 14042548-14044950                                         28   9.1  

>03_01_0259 - 1996427-1998772
          Length = 781

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 496 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 392
           I  ++ V++ N   HHALKLI + +  +I  GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765


>04_04_0923 +
           29441740-29441980,29442321-29442401,29442630-29442719,
           29443123-29443203,29443721-29443774,29444062-29444111,
           29444542-29444623,29444734-29444838,29445514-29445641,
           29445726-29445797,29445887-29445937,29446029-29446100,
           29446201-29446278,29446446-29447270,29447648-29448556
          Length = 972

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 199 SMYESDVMFFVYN-REYNSVMTLDEDMAANEDREALGHSGEVSGYPQLFAW*HRPLTXAL 23
           S Y S++ ++++N  E    ++LD     N+D E   H G +    QL    H   T  L
Sbjct: 202 SKYHSEITYYIFNFYEAGRSISLDTGNKDNKDAERSIHPGNIQNMTQLVLTEHNANTLIL 261


>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
          Length = 461

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 428 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 514
           +V    GVM P + +L  LLGE+++KL G
Sbjct: 7   IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 214 WYLEPSMYESDVMFFVYNREYNSV 143
           W    + Y  DV+ F YN+EY+ V
Sbjct: 59  WLAGKTFYAGDVLVFKYNKEYHDV 82


>05_03_0469 + 14439472-14440905
          Length = 477

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 402 VTPKTKPARKSPGS--LPPCWKTTEYTSRSCPP 310
           +T  T+ AR  PG+  +PP W+    T+RS PP
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPP 219


>04_04_0806 -
           28186486-28186701,28187047-28187341,28189800-28189942,
           28190041-28190095,28190181-28190223,28190411-28190486,
           28190708-28190826,28190917-28191487
          Length = 505

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -1

Query: 689 IGEYETAIAKCSEYLKEKKGRGYQGSREASDRKRQEEHHGLR-LPVMDKGWKGNRQILL 516
           IGE E A+++  E L+  + +  +    +SD   +EE HG +   V  + W G  +++L
Sbjct: 129 IGEEEGAMSREDEMLETSEEKEEEEISGSSDETEEEEGHGHKYYSVQIRMWPGIPRVVL 187


>01_05_0346 +
           21191542-21191783,21191988-21192072,21192159-21192422,
           21192518-21192820,21193695-21193799,21193916-21194020,
           21194613-21194712,21195614-21195933,21196183-21196359,
           21196432-21196560,21196592-21196636,21196851-21197078
          Length = 700

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 412 IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNT 278
           I F D K+K  K    K    +EN+ + F +M+  D QYL  +NT
Sbjct: 354 ILFNDMKEKGVKSGK-KCVLSMENHGIGFLLMAYNDVQYLVPNNT 397


>08_01_0692 + 6121443-6122266,6122812-6124798
          Length = 936

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 425 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 538
           ++V    GVM P + +L +L+G+++ KL G  +   FL
Sbjct: 7   IVVSASMGVMKPLLAKLTTLMGDEYKKLKGVRKQVSFL 44


>01_03_0233 + 14042548-14044950
          Length = 800

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 594 SIRRFTASLITSPLLFLQIFRAFGDS-GLVFTNDD 695
           S++RF AS +T     L++F AFG+S   +F + D
Sbjct: 675 SVKRFNASAVTGIDTDLKMFEAFGESMSSLFVDSD 709


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,691,173
Number of Sequences: 37544
Number of extensions: 439905
Number of successful extensions: 1378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)