Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g18r
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical pr...    35   0.071
Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF039713-6|AAB96723.1|  829|Caenorhabditis elegans Hypothetical ...    30   1.5  
U41535-6|AAK67248.1|  482|Caenorhabditis elegans Lin-26 related ...    29   3.5  
U41535-5|AAK67252.1|  548|Caenorhabditis elegans Lin-26 related ...    29   3.5  
AJ130960-1|CAA10264.1|  482|Caenorhabditis elegans LIR-2B protei...    29   3.5  
AJ130959-1|CAA10263.1|  548|Caenorhabditis elegans LIR-2A protei...    29   3.5  
Z22180-4|CAA80178.1|  312|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    28   6.2  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    28   6.2  
Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical
           protein F15A4.8b protein.
          Length = 808

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -3

Query: 405 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSXTVIAPLTP 226
           +VT  T        ++P    TT   S + PP  ++T + +T+      V  T IAP+T 
Sbjct: 407 NVTSTTTAPTTESSAIPDVTSTTTTKSSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTM 466

Query: 225 SNTT 214
            +TT
Sbjct: 467 PSTT 470


>Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical
           protein C08H9.11 protein.
          Length = 459

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -2

Query: 610 VKRLIENGKRNTMDFAYQLWTKDGKEIVKSY--FPIQFRVIFTEQTVKLINKRDHHALKL 437
           VK ++   K+N +D     WT+   E +KSY  F  + R  FTE   K  N+++ + + L
Sbjct: 202 VKSIVSFFKKNDIDGIEIFWTRPKYEDIKSYSSFIQELRSAFTE-LQKRWNRKNEYIISL 260

Query: 436 I 434
           I
Sbjct: 261 I 261


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 396 PKTKPARKSPGSLPPCWKTTE--YTSRSCPPKTNST 295
           PKT+P    P ++P CW+     +     PP+ N+T
Sbjct: 418 PKTEPPTTEPPNIPYCWQQQSRLFAPSPPPPRVNNT 453


>AF039713-6|AAB96723.1|  829|Caenorhabditis elegans Hypothetical
           protein F57B10.6 protein.
          Length = 829

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 677 ETAIAKCSEYLKEKKGRGYQ---GSREASDRKRQEEHHG 570
           E  + +  E L +KK RGYQ   G  EA  RKR  +H+G
Sbjct: 338 EEIVDRLEERLIDKKERGYQSKSGMLEAIARKRIRQHYG 376


>U41535-6|AAK67248.1|  482|Caenorhabditis elegans Lin-26 related
           protein 2, isoform b protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 731 TDDVLAEQLYMSVVIGEYETAIAK-CSEYLKEKKGRGYQGSRE 606
           TD+ + E +   + IGEY+  +A+ C +   E+KGR  Q   E
Sbjct: 34  TDEKMEELVRRRICIGEYDEQLARVCLDIEDEEKGRTEQFGNE 76


>U41535-5|AAK67252.1|  548|Caenorhabditis elegans Lin-26 related
           protein 2, isoform a protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 731 TDDVLAEQLYMSVVIGEYETAIAK-CSEYLKEKKGRGYQGSRE 606
           TD+ + E +   + IGEY+  +A+ C +   E+KGR  Q   E
Sbjct: 100 TDEKMEELVRRRICIGEYDEQLARVCLDIEDEEKGRTEQFGNE 142


>AJ130960-1|CAA10264.1|  482|Caenorhabditis elegans LIR-2B protein
           protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 731 TDDVLAEQLYMSVVIGEYETAIAK-CSEYLKEKKGRGYQGSRE 606
           TD+ + E +   + IGEY+  +A+ C +   E+KGR  Q   E
Sbjct: 34  TDEKMEELVRRRICIGEYDEQLARVCLDIEDEEKGRTEQFGNE 76


>AJ130959-1|CAA10263.1|  548|Caenorhabditis elegans LIR-2A protein
           protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 731 TDDVLAEQLYMSVVIGEYETAIAK-CSEYLKEKKGRGYQGSRE 606
           TD+ + E +   + IGEY+  +A+ C +   E+KGR  Q   E
Sbjct: 100 TDEKMEELVRRRICIGEYDEQLARVCLDIEDEEKGRTEQFGNE 142


>Z22180-4|CAA80178.1|  312|Caenorhabditis elegans Hypothetical
           protein K11H3.3 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 628 EVIKEAVKRLIENGKRNTMDFAYQLWTKDG 539
           +V+K  ++ L     +NT+D A Q+W K+G
Sbjct: 242 DVVKTRMQGLEAKKYKNTLDCAMQIWKKEG 271


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform b
            protein.
          Length = 1250

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = -2

Query: 499  VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 344
            ++ T++ +K++N     +R  H L L      +KI F D     D +   + W  +P LE
Sbjct: 911  IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970

Query: 343  NNRVYFKIMSTEDK 302
               V FK+    +K
Sbjct: 971  AGTVLFKVSIFREK 984


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = -2

Query: 499  VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 344
            ++ T++ +K++N     +R  H L L      +KI F D     D +   + W  +P LE
Sbjct: 911  IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970

Query: 343  NNRVYFKIMSTEDK 302
               V FK+    +K
Sbjct: 971  AGTVLFKVSIFREK 984


>Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical
           protein F15A4.8a protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 342 TTEYTSRSCPPKTNST*SSITRKVLVMTVSXTVIAPLTPSNTT 214
           TTE  S + PP  ++T + +T+      V  T IAP+T  +TT
Sbjct: 393 TTE--SSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTT 433


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
           protein F37D6.1 protein.
          Length = 1227

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/72 (25%), Positives = 31/72 (43%)
 Frame = +2

Query: 269 RTFRVIELQVLFVFGGHDLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLLVDQLEG 448
           R F  +E+ +  + G        ++  HGGK+PG          T C++   L+ D++ G
Sbjct: 273 RVFEGLEMAITSIDGADRTNFIQLIEDHGGKVPG------TMSKTRCSY---LISDKITG 323

Query: 449 VMVPFVYELDSL 484
           V      E  S+
Sbjct: 324 VKYAKAVEWKSM 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,484,893
Number of Sequences: 27780
Number of extensions: 378911
Number of successful extensions: 1394
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)