Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12g12r
(788 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC002931-1|AAH02931.1| 744|Homo sapiens CCR4-NOT transcription ... 31 6.3
BC002928-1|AAH02928.1| 717|Homo sapiens CNOT10 protein protein. 31 6.3
AK023227-1|BAB14478.1| 744|Homo sapiens protein ( Homo sapiens ... 31 6.3
AK022952-1|BAB14327.1| 744|Homo sapiens protein ( Homo sapiens ... 31 6.3
AK022576-1|BAB14108.1| 743|Homo sapiens protein ( Homo sapiens ... 31 6.3
AK021695-1|BAB13876.1| 595|Homo sapiens protein ( Homo sapiens ... 31 6.3
Z26634-1|CAB42644.1| 3925|Homo sapiens ankyrin B (440 kDa) protein. 30 8.3
AL160037-1|CAH72024.1| 1371|Homo sapiens leucine rich repeat con... 30 8.3
AL024509-3|CAI21665.1| 1371|Homo sapiens leucine rich repeat con... 30 8.3
AL022170-1|CAI21583.1| 1371|Homo sapiens leucine rich repeat con... 30 8.3
AF430017-1|AAL89737.1| 1029|Homo sapiens intestinal membrane muc... 30 8.3
AF016692-1|AAB71685.1| 648|Homo sapiens small intestinal mucin ... 30 8.3
>BC002931-1|AAH02931.1| 744|Homo sapiens CCR4-NOT transcription
complex, subunit 10 protein.
Length = 744
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 530 LTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQDGT 408
LT EKA +LA+ + + + + N KN NNN +DG+
Sbjct: 161 LTYQAEKALHLLAVLEKMISQGNNNKNGKNETGNNNNKDGS 201
>BC002928-1|AAH02928.1| 717|Homo sapiens CNOT10 protein protein.
Length = 717
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 530 LTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQDGT 408
LT EKA +LA+ + + + + N KN NNN +DG+
Sbjct: 161 LTYQAEKALHLLAVLEKMISQGNNNKNGKNETGNNNNKDGS 201
>AK023227-1|BAB14478.1| 744|Homo sapiens protein ( Homo sapiens
cDNA FLJ13165 fis, clone NT2RP3003686. ).
Length = 744
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 530 LTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQDGT 408
LT EKA +LA+ + + + + N KN NNN +DG+
Sbjct: 161 LTYQAEKALHLLAVLEKMISQGNNNKNGKNETGNNNNKDGS 201
>AK022952-1|BAB14327.1| 744|Homo sapiens protein ( Homo sapiens
cDNA FLJ12890 fis, clone NT2RP2004124. ).
Length = 744
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 530 LTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQDGT 408
LT EKA +LA+ + + + + N KN NNN +DG+
Sbjct: 161 LTYQAEKALHLLAVLEKMISQGNNNKNGKNETGNNNNKDGS 201
>AK022576-1|BAB14108.1| 743|Homo sapiens protein ( Homo sapiens
cDNA FLJ12514 fis, clone NT2RM2001768. ).
Length = 743
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 530 LTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQDGT 408
LT EKA +LA+ + + + + N KN NNN +DG+
Sbjct: 160 LTYQAEKALHLLAVLEKMISQGNNNKNGKNETGNNNNKDGS 200
>AK021695-1|BAB13876.1| 595|Homo sapiens protein ( Homo sapiens
cDNA FLJ11633 fis, clone HEMBA1004274. ).
Length = 595
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 530 LTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQDGT 408
LT EKA +LA+ + + + + N KN NNN +DG+
Sbjct: 61 LTYQAEKALHLLAVLEKMISQGNNNKNGKNETGNNNNKDGS 101
>Z26634-1|CAB42644.1| 3925|Homo sapiens ankyrin B (440 kDa) protein.
Length = 3925
Score = 30.3 bits (65), Expect = 8.3
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 615 VIINNGVMAISSRSSQVPEC*SSKKSSYPGSCIPTPVSALPVRLTPPNPLP 767
V++ + +SS S PE KK + G +P PV +R+ PP+PLP
Sbjct: 2651 VLVTSESRKVSSSSESEPELAQLKKGADSG-LLPEPV----IRVQPPSPLP 2696
>AL160037-1|CAH72024.1| 1371|Homo sapiens leucine rich repeat
containing 16 protein.
Length = 1371
Score = 30.3 bits (65), Expect = 8.3
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -1
Query: 266 INSTTSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPINPCFAVNQNLTVI 87
IN + + S +P +A+ L L N G+S + NC G + + C A N+T +
Sbjct: 429 INLSGTKLSPEPLKALLLGLACNHNLKGVSLDLSNCELRSGGAQ-VLEGCIAEIHNITSL 487
Query: 86 PIS 78
IS
Sbjct: 488 DIS 490
>AL024509-3|CAI21665.1| 1371|Homo sapiens leucine rich repeat
containing 16 protein.
Length = 1371
Score = 30.3 bits (65), Expect = 8.3
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -1
Query: 266 INSTTSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPINPCFAVNQNLTVI 87
IN + + S +P +A+ L L N G+S + NC G + + C A N+T +
Sbjct: 429 INLSGTKLSPEPLKALLLGLACNHNLKGVSLDLSNCELRSGGAQ-VLEGCIAEIHNITSL 487
Query: 86 PIS 78
IS
Sbjct: 488 DIS 490
>AL022170-1|CAI21583.1| 1371|Homo sapiens leucine rich repeat
containing 16 protein.
Length = 1371
Score = 30.3 bits (65), Expect = 8.3
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -1
Query: 266 INSTTSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPINPCFAVNQNLTVI 87
IN + + S +P +A+ L L N G+S + NC G + + C A N+T +
Sbjct: 429 INLSGTKLSPEPLKALLLGLACNHNLKGVSLDLSNCELRSGGAQ-VLEGCIAEIHNITSL 487
Query: 86 PIS 78
IS
Sbjct: 488 DIS 490
>AF430017-1|AAL89737.1| 1029|Homo sapiens intestinal membrane mucin
MUC17 protein.
Length = 1029
Score = 30.3 bits (65), Expect = 8.3
Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 1/177 (0%)
Frame = -1
Query: 590 PANDSSPANDS-FLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQD 414
P +SSP N S +++ + + +GE +T + +P + S +A+T + ++
Sbjct: 24 PVTNSSPTNSSPTTAEVTSMPTSTAGEGSTPLTNMPVSTTPVASSEASTLSTTPVDSNT- 82
Query: 413 GTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNVTEAPIVENEKVEIDTINSTTSPFSDD 234
VT ++ + T ++ ++T +E + + ++ + + ST S S D
Sbjct: 83 ----FVTSSSQASSSPATLQVTTMRMSTPSEGSSSLTTMLLSSTYVTSSEASTPSTPSVD 138
Query: 233 PNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPINPCFAVNQNLTVIPISTTLAT 63
+ V TT +Q+N TP I P++ V+ LT++P+STT T
Sbjct: 139 RSTPV----TTS------TQSNSTPTPPE-VITLPMSTPSEVSTPLTIMPVSTTSVT 184
>AF016692-1|AAB71685.1| 648|Homo sapiens small intestinal mucin
MUC3 protein.
Length = 648
Score = 30.3 bits (65), Expect = 8.3
Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 1/177 (0%)
Frame = -1
Query: 590 PANDSSPANDS-FLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQD 414
P +SSP N S +++ + + +GE +T + +P + S +A+T + ++
Sbjct: 24 PVTNSSPTNSSPTTAEVTSMPTSTAGEGSTPLTNMPVSTTPVASSEASTLSTTPVDSNT- 82
Query: 413 GTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNVTEAPIVENEKVEIDTINSTTSPFSDD 234
VT ++ + T ++ ++T +E + + ++ + + ST S S D
Sbjct: 83 ----FVTSSSQASSSPATLQVTTMRMSTPSEGSSSLTTMLLSSTYVTSSEASTPSTPSVD 138
Query: 233 PNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPINPCFAVNQNLTVIPISTTLAT 63
+ V TT +Q+N TP I P++ V+ LT++P+STT T
Sbjct: 139 RSTPV----TTS------TQSNSTPTPPE-VITLPMSTPSEVSTPLTIMPVSTTSVT 184
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,583,313
Number of Sequences: 237096
Number of extensions: 2318398
Number of successful extensions: 5887
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5887
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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