Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g12f
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    28   0.94 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   2.9  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   5.0  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    26   5.0  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   6.6  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    25   6.6  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   6.6  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   8.8  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   8.8  

>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 219 TSYKPQPAPTSFSYPQSAAHKPSLSGWQEKPATN 320
           TS +  PAPT+  +P   +  PS+S  Q +PA N
Sbjct: 547 TSQQLNPAPTAMPHPNITSPSPSISVTQ-RPAVN 579


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 378 YPSSQTGLSGNSQPKQPPKYQETVQRNN 461
           + +S T ++  SQP+ PP+  E++Q +N
Sbjct: 764 HANSSTPMNYVSQPESPPQSYESIQNDN 791


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 234 QPAPTSFSYPQ 266
           QPAPT FSYP+
Sbjct: 655 QPAPTEFSYPE 665


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 507 ADYLF*FVGSSNTEEHYFFEQFLDTWVVVL-AGCSL 403
           ADY F  +      EH F  Q +DTW+  + A C L
Sbjct: 210 ADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPL 245


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 158  NEYAHYKY**FFIHLAKHFNFSDPSKQFYTIQMRSPRSV 42
            NE+A+Y    F + L +H     P+KQ    Q +SP  V
Sbjct: 1930 NEWANY----FMLCLIRHATRDSPAKQAPQFQSKSPECV 1964


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 175 FLHSIQMNMHIININSFLSILRNT 104
           F H + +N+ I +I SFL +L NT
Sbjct: 309 FAHGMLLNLGIGSIGSFLYLLSNT 332


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 533 IGRWVRMTLLIICSSLLGVRILRSIISLNSFLILGW 426
           IGRWV    L  C  +     LRS+I L++     W
Sbjct: 393 IGRWVLTNQLRKCGIIGATHPLRSVIPLDNIFCNIW 428


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 208 QVRELATSLNQPQHLLVILSRQRISRH 288
           Q+ ELA S+N P   L ++   R S H
Sbjct: 271 QIEELAASINFPLKKLYVIDASRRSTH 297


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 121 SILRNTLISPIRPNSFIRYRCDRQGAFISTNS 26
           ++L+NT +     NS I Y CD   A   +N+
Sbjct: 356 AVLKNTSVPHELANSIIDYVCDALAALYKSNN 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,448
Number of Sequences: 5004
Number of extensions: 42711
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)