Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g10f
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical pr...   216   9e-57
AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome al...   130   6e-31
Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical pr...   118   2e-27
Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical pr...   107   6e-24
Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical pr...   104   6e-23
Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical pr...    94   6e-20
AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome al...    85   5e-17
U23169-6|AAC46695.1|  393|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z66561-2|CAA91460.1|  331|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta...    28   5.9  
L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical
           protein C15H11.7 protein.
          Length = 246

 Score =  216 bits (528), Expect = 9e-57
 Identities = 95/169 (56%), Positives = 132/169 (78%)
 Frame = +1

Query: 91  MARESSAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRL 270
           M+R SSAGFDRHITIFSPEGR+YQVEYA KAIN   LT+VA++G DAAV+A Q++VPD L
Sbjct: 1   MSRGSSAGFDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSL 60

Query: 271 LDPVSVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIAD 450
           +   +VT ++ ++  +GC   GMI D++ Q++RA+ EAA+W+YK G ++P  +L +++AD
Sbjct: 61  IVADTVTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMAD 120

Query: 451 ISQVYTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAG 597
           ++Q YTQNAEMR LGC+++ I+YDDE GP VY+ DP+GYY   K V+ G
Sbjct: 121 LNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVG 169


>AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome alpha
           subunit protein 3 protein.
          Length = 250

 Score =  130 bits (315), Expect = 6e-31
 Identities = 66/163 (40%), Positives = 100/163 (61%), Gaps = 1/163 (0%)
 Frame = +1

Query: 115 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 294
           +D   TIFSPEGRLYQVEYA++AI+  G T + +  ++  VVAA+RK   +LLD   +T 
Sbjct: 5   YDSRTTIFSPEGRLYQVEYAMEAISHAG-TCLGILSSEGIVVAAERKNVHKLLDDSVMTE 63

Query: 295 -LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQ 471
            ++ L+D I C + G+ AD+   +   R+ AA+++  YG E+PV  L + + +  Q YTQ
Sbjct: 64  KVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQ 123

Query: 472 NAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGA 600
               RP G S++ I +D   G  +Y++DPSG Y  +KA   G+
Sbjct: 124 IGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGS 166


>Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical
           protein C36B1.4 protein.
          Length = 253

 Score =  118 bits (285), Expect = 2e-27
 Identities = 60/161 (37%), Positives = 93/161 (57%)
 Frame = +1

Query: 115 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 294
           +DR ITIFSP+G L+QVEYA +A+ +G  T+V +RG D  V+  ++K    L D  ++  
Sbjct: 4   YDRAITIFSPDGHLFQVEYAQEAVKKGS-TAVGVRGKDCIVIGVEKKSIPALQDDRTIRK 62

Query: 295 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 474
           +  + D +     G+ AD+R  V RAR E  +++      + V  + R IA+  Q +TQ+
Sbjct: 63  IHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQS 122

Query: 475 AEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAG 597
              RP G SM++  +D +  P ++KT+PSG Y  Y A A G
Sbjct: 123 PGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATG 163


>Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical
           protein D1054.2 protein.
          Length = 231

 Score =  107 bits (257), Expect = 6e-24
 Identities = 62/158 (39%), Positives = 89/158 (56%), Gaps = 1/158 (0%)
 Frame = +1

Query: 127 ITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLFAL 306
           +T FSP G+L Q+EYAL A+ + G  SV LR  D  V+A +  V   L D         +
Sbjct: 9   LTTFSPSGKLMQIEYALNAV-KNGQPSVGLRAKDGVVLATEN-VGSVLTDDQPKVE--QI 64

Query: 307 TDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMR 486
           +  IGCV +GM  D R  V++AR  A  ++  YG E+P   L   IA + Q YTQ+  +R
Sbjct: 65  SKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVR 124

Query: 487 PLGCSMMLIAYDDEAG-PCVYKTDPSGYYCSYKAVAAG 597
           P G S+++  +D   G P +++ DPSG Y ++KA A G
Sbjct: 125 PFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALG 162


>Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical
           protein F25H2.9 protein.
          Length = 248

 Score =  104 bits (249), Expect = 6e-23
 Identities = 56/166 (33%), Positives = 99/166 (59%), Gaps = 4/166 (2%)
 Frame = +1

Query: 115 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 294
           +DR +  FSPEGRL+QVEYA++A+  G  TS+ ++ ++  ++AA+++   +L+   ++  
Sbjct: 8   YDRGVNTFSPEGRLFQVEYAIEAVKLGS-TSIGIKTSEGVLLAAEKRSTSKLMVNDAIEK 66

Query: 295 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 474
           +  +   IG    G+IADSR+ V+RA+ EA N+ + Y  +I V  + + +A+++  +  +
Sbjct: 67  ISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDD 126

Query: 475 ---AEM-RPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGA 600
              A M RP G +M+    D E G  ++  DPSG +   KA + GA
Sbjct: 127 DVKASMSRPFGVAMLFAGVDQE-GAKLFHLDPSGTFIDCKAKSIGA 171


>Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK945.2 protein.
          Length = 250

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 48/162 (29%), Positives = 82/162 (50%)
 Frame = +1

Query: 112 GFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVT 291
           G+D   + FSP+GR++QVEYA KA++  G T +A+RG +  VV A + +  +L    +  
Sbjct: 7   GYDLAASTFSPDGRIFQVEYAQKAVDNAG-TMIAIRGKNGVVVVADKLISSKLYTDNANP 65

Query: 292 HLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQ 471
            +F + D +G  + G   D  +    A  EA  W   Y   +P+  +   +A+   ++T 
Sbjct: 66  RMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTL 125

Query: 472 NAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAG 597
               RP G     ++++ + G  ++  +PSG    YKA A G
Sbjct: 126 GIS-RPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVG 166


>AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome alpha
           subunit protein 6 protein.
          Length = 260

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 46/162 (28%), Positives = 84/162 (51%)
 Frame = +1

Query: 115 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 294
           +D  +T++SP+GRL+QVEYA++A+ QG  T V ++    AV+ A ++  + L        
Sbjct: 6   YDGDVTVWSPQGRLHQVEYAVEAMKQGSAT-VGIKSETHAVIVALKRAQNDLSS--HQKK 62

Query: 295 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 474
           ++ +    G  + G+++D R   +  + E ++W++ Y   +P+  L   +    Q  TQ 
Sbjct: 63  VYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQY 122

Query: 475 AEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGA 600
              RP G  +++  YD + G  + +TDPS    S    + GA
Sbjct: 123 YGRRPFGVGILIAGYDKD-GAHIIQTDPSAEVVSMHGTSIGA 163


>U23169-6|AAC46695.1|  393|Caenorhabditis elegans Hypothetical
           protein C29H12.2 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 139 SPEGRLYQVEYALKAINQGGLTSVALRGTDAAV 237
           +PEGRL  V YA K I +    ++AL GT  ++
Sbjct: 250 NPEGRLEDVFYAWKEITEEPTIALALSGTVVSI 282


>Z66561-2|CAA91460.1|  331|Caenorhabditis elegans Hypothetical
           protein F08G12.2 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
 Frame = +3

Query: 357 SSTTSSLRGC--QLAVQVWV*DT--CAYLMQTHS*YLSSLHPKCRDET 488
           ++ +SSL  C    +V+VW  +T  CA   +TH+ +++++HP  R  T
Sbjct: 90  TTDSSSLVSCGTDKSVRVWDMETGTCARRFRTHTDFVNAVHPSRRGVT 137


>U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta
           subunit protein 3 protein.
          Length = 204

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/88 (15%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +1

Query: 196 GLTSVALRGTDAAVVAAQRKVPDRLLD-PVSVTHLFALTDRIGCVMTGMIADSRSQVQRA 372
           G T VA+ G +   +A+  ++ +++         +  +TD++   + G  +D+R+ +++ 
Sbjct: 8   GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67

Query: 373 RYEAANWQYKYGSEIPVHILCRRIADIS 456
            +    ++ +    I   +L   I++++
Sbjct: 68  MFRKNLYELRENRNIKPQVLSEMISNLA 95


>L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical
           protein C06G4.1 protein.
          Length = 886

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = +1

Query: 145 EGRLYQVEYA-------LKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLD 276
           + RL ++ YA       L+ + +GG T V L+G    +  AQ+ + D ++D
Sbjct: 558 KARLLEIHYATGCHLIFLEEVKRGGYTYVELKGDPEHIKNAQKMIDDMVID 608


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,307,698
Number of Sequences: 27780
Number of extensions: 261547
Number of successful extensions: 619
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)