Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g08r
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.92 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   4.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +2

Query: 47  VAILSQRPTR*LTIFAAFLTEYLD-VWLFLFVSFNIVA 157
           + IL ++P+R  T+  +FL  + + +W+ + VS ++VA
Sbjct: 544 ITILEKKPSRSSTL-VSFLQPFSNTLWILVMVSVHVVA 580


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 188 KVPNEPPIYLSQRY*KTRTETATHLGIP*ETLQIL*VNVLGVGLRSQRSKSST 30
           + P  PP  +   Y +TR +  T+LG+  E  Q    + L V L S+ + +ST
Sbjct: 122 RYPLRPPQEVISHYRRTRRDRYTNLGLVNEQGQTW--HDLRVALTSELTAAST 172


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 604  DRESVAGGVSEESRRCYNNRTSLEGSK 684
            +RE V  G++E S    N+R + + SK
Sbjct: 1238 EREGVGAGIAETSAGTSNSRGAAQMSK 1264


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 279 LPRTRPASRSLQLP 320
           LP TRP  ++L+LP
Sbjct: 179 LPPTRPTDKALRLP 192


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 279 LPRTRPASRSLQLP 320
           LP TRP  ++L+LP
Sbjct: 236 LPPTRPTDKALRLP 249


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 436 GLRFSADHDKR 468
           G+RF ADH KR
Sbjct: 485 GIRFIADHTKR 495


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 518 SSNFVFNSLPNDSFVFVTSTVL 583
           ++ +VF +L N +F+ + ST+L
Sbjct: 2   TAKYVFTTLINAAFLCLASTIL 23


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = -1

Query: 234 TAKLVHCEPVWIGRGESPQRTADILVATILKDTNRNSHTS 115
           T + +  EP  IG+  S     ++    + + TN +  +S
Sbjct: 693 TVRFIEAEPQPIGKALSKCHNRNVTTCNMFRKTNLSGDSS 732


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,449
Number of Sequences: 438
Number of extensions: 3349
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)