Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g08f
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   4.3  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   5.7  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   5.7  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    25   5.7  

>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 551 VHPHSSNFVFNSLPNDS 501
           VH H +N +F SLPN S
Sbjct: 741 VHLHLANMIFESLPNAS 757


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 334 LSCLQTRNPSRYSSHTDQYDLNYFTVN 254
           +S L++++ SRY+SH D   LN +  N
Sbjct: 197 ISHLKSKSRSRYASHPDLQALNTWMTN 223


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 456  SDRESVAGGVSEESRRCYNNRTSLEGSKQTPSQAGAEFHRL 334
            +D ES+   +SE   +  + R  L  +  +  +  AE HRL
Sbjct: 1330 ADHESIRSKLSEVEMKLVDTRKELNSALDSCKKREAEIHRL 1370


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 337 PLSCLQTRNPSRYSSHTDQYDLNYF 263
           PL+ ++T NP+ +SS+T   D+ +F
Sbjct: 442 PLATMKTCNPAVFSSNTSLDDMFFF 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,953
Number of Sequences: 5004
Number of extensions: 43715
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)