Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g08f
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0183 - 1537906-1539141                                           31   0.82 
10_01_0133 + 1621574-1625779                                           29   2.5  
03_02_0192 + 6295239-6295279,6295548-6295639,6295839-6296024,629...    29   3.3  
04_03_1004 + 21637910-21638269,21638424-21638579,21640108-216402...    28   4.4  
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743...    28   5.8  
10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249...    27   7.7  
02_04_0619 - 24481641-24482291,24482426-24482640,24482770-244831...    27   7.7  
01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386     27   7.7  

>08_01_0183 - 1537906-1539141
          Length = 411

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -1

Query: 480 CSDWSLICSDRESVAGGVSEESRRCYNNRTSLEGSKQTPS-QAGAEFHR-LCHAF 322
           C  WS  CS R  V    S +S  C+     LE  K  P    GAE HR LC  F
Sbjct: 331 CVYWSARCSSRAKVFDVESGKSATCF-PVVDLETGKSAPGFPGGAEAHRALCWFF 384


>10_01_0133 + 1621574-1625779
          Length = 1401

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 295  MNIVKDFEFEGMTEAVEFGAGLAWRLLATLE 387
            +  +K  EF GM   VE+ +G  W L + LE
Sbjct: 921  LETLKSIEFNGMLSMVEWVSGNTWHLFSQLE 951


>03_02_0192 +
           6295239-6295279,6295548-6295639,6295839-6296024,
           6296531-6296672,6296729-6296849
          Length = 193

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 373 ADAKPSRRRIPPPLSCLQTRNPS 305
           A+A P   R+PPP+ C+++R P+
Sbjct: 7   AEAFPLSSRVPPPVYCMRSRVPN 29


>04_03_1004 +
           21637910-21638269,21638424-21638579,21640108-21640202,
           21640478-21640505,21640725-21640752,21642353-21642363
          Length = 225

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 392 PPSRVASRRQAKPAPNSTASVMPSNSKSFT 303
           PP R A R Q  P P+S A    S+S S T
Sbjct: 12  PPPRPAGRAQRPPPPHSVAPKRASSSSSST 41


>03_02_0320 +
           7437528-7437623,7437725-7437772,7438885-7438994,
           7439651-7439735,7439839-7440115,7440296-7440454,
           7440563-7440666,7440930-7441168,7441265-7441583,
           7441665-7442069,7442157-7442294,7442376-7442555
          Length = 719

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 383 RVASRRQAKPAPNSTASVMPSNSKSFTIFI 294
           R  S   A  +P+S + V PSNS+ F  F+
Sbjct: 584 REGSNNSASSSPDSDSDVHPSNSEGFQCFL 613


>10_08_0136 -
           15122420-15122469,15123845-15124334,15124822-15124935,
           15125022-15125303,15125422-15125591,15125670-15125757,
           15126128-15126173,15126254-15126336,15126595-15126694,
           15127002-15127081,15127200-15127283,15127373-15127531,
           15128617-15128772,15129634-15130197
          Length = 821

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 450 RESVAGGVSEESRRCYNNRTSLEGSKQTPSQAG 352
           R+SVA G  E +     N+T LE +KQ P+  G
Sbjct: 430 RDSVARGEDESTGYILPNKTLLEIAKQMPATTG 462


>02_04_0619 -
           24481641-24482291,24482426-24482640,24482770-24483154,
           24483170-24483258,24485488-24485622,24485833-24487108
          Length = 916

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 417 SPRLHRPQPTLDPNRXXXXXXXXXXEYE*IIRKRIENE 530
           +P  H+ QP + P+R          EY  II+ +IE E
Sbjct: 699 NPGAHKLQPLITPSRGIYAVGLVLIEYSLIIKGQIEGE 736


>01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386
          Length = 871

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 450 RESVAGGVSEESRRCYNNRTSLEGSKQTPSQ 358
           R++V   +  E RRC NN++ + G K   ++
Sbjct: 445 RKAVTKEMEAEKRRCINNKSKVSGQKNNTNK 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,963,365
Number of Sequences: 37544
Number of extensions: 267150
Number of successful extensions: 710
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)