Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g08f
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       27   6.9  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    27   6.9  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    27   6.9  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    27   6.9  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    27   6.9  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    27   6.9  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   9.1  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   9.1  
AC024751-4|AAK21505.1|  425|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 234 TSVYIKK*VCIQFDF*THKGKAEFEKRANRDSNFKCPKLQCTLFFLILCRQRHMRF 67
           T VY  K   IQ +F + + KAE   +A+ D N   P+ Q T+ ++       +RF
Sbjct: 715 TGVYTVK---IQNEFGSIESKAELFVQADPDKNHVAPEFQATIEYVECDEGEEVRF 767


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
           protein 89, isoform e protein.
          Length = 5992

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 234 TSVYIKK*VCIQFDF*THKGKAEFEKRANRDSNFKCPKLQCTLFFLILCRQRHMRF 67
           T VY  K   IQ +F + + KAE   +A+ D N   P+ Q T+ ++       +RF
Sbjct: 715 TGVYTVK---IQNEFGSIESKAELFVQADPDKNHVAPEFQATIEYVECDEGEEVRF 767


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
           protein 89, isoform a protein.
          Length = 6632

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 234 TSVYIKK*VCIQFDF*THKGKAEFEKRANRDSNFKCPKLQCTLFFLILCRQRHMRF 67
           T VY  K   IQ +F + + KAE   +A+ D N   P+ Q T+ ++       +RF
Sbjct: 715 TGVYTVK---IQNEFGSIESKAELFVQADPDKNHVAPEFQATIEYVECDEGEEVRF 767


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
           protein 89, isoform g protein.
          Length = 7122

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 234 TSVYIKK*VCIQFDF*THKGKAEFEKRANRDSNFKCPKLQCTLFFLILCRQRHMRF 67
           T VY  K   IQ +F + + KAE   +A+ D N   P+ Q T+ ++       +RF
Sbjct: 715 TGVYTVK---IQNEFGSIESKAELFVQADPDKNHVAPEFQATIEYVECDEGEEVRF 767


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
           protein 89, isoform f protein.
          Length = 7441

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 234 TSVYIKK*VCIQFDF*THKGKAEFEKRANRDSNFKCPKLQCTLFFLILCRQRHMRF 67
           T VY  K   IQ +F + + KAE   +A+ D N   P+ Q T+ ++       +RF
Sbjct: 715 TGVYTVK---IQNEFGSIESKAELFVQADPDKNHVAPEFQATIEYVECDEGEEVRF 767


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
           protein 89, isoform b protein.
          Length = 8081

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 234 TSVYIKK*VCIQFDF*THKGKAEFEKRANRDSNFKCPKLQCTLFFLILCRQRHMRF 67
           T VY  K   IQ +F + + KAE   +A+ D N   P+ Q T+ ++       +RF
Sbjct: 715 TGVYTVK---IQNEFGSIESKAELFVQADPDKNHVAPEFQATIEYVECDEGEEVRF 767


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 429   VSEESRRCYNNRTSLEGSKQTPSQAGAEF 343
             VSE+    Y+ +T     K++P  AGAE+
Sbjct: 11722 VSEKGHDTYSEKTVKSSKKKSPQTAGAEY 11750


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 429   VSEESRRCYNNRTSLEGSKQTPSQAGAEF 343
             VSE+    Y+ +T     K++P  AGAE+
Sbjct: 11722 VSEKGHDTYSEKTVKSSKKKSPQTAGAEY 11750


>AC024751-4|AAK21505.1|  425|Caenorhabditis elegans Hypothetical
           protein Y18H1A.1 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 395 EPPSRVASRRQAKPAPNSTASVMPSNSKSFT 303
           +PP  + S R+ K APN + SV  S+  S T
Sbjct: 74  QPPKDLISGRKPKGAPNLSGSVPLSHKSSLT 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,427,711
Number of Sequences: 27780
Number of extensions: 254893
Number of successful extensions: 676
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)