Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g06r
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167...    28   9.7  
11_03_0017 + 8990852-8990938,8991056-8991243,8991687-8991795,899...    28   9.7  
02_01_0040 + 274710-274762,274990-275070,275366-275505,275655-27...    28   9.7  

>12_01_0222 -
           1675077-1675289,1675476-1675553,1675943-1676002,
           1676103-1676206,1676321-1676479,1676768-1676894,
           1677569-1677736,1677890-1678000,1678090-1678243,
           1678409-1678744,1678854-1679038,1679141-1679239,
           1679376-1679639,1679776-1679952,1680351-1680644,
           1680753-1680920,1681574-1681918,1682002-1682171,
           1682272-1682422,1683296-1683365,1683456-1683640,
           1683999-1684092,1684195-1684313,1684658-1684717,
           1684844-1684930,1685631-1685717,1685905-1686013,
           1686105-1686183,1686350-1686437,1686611-1686675,
           1687570-1687722,1688514-1688620,1688702-1688784,
           1688926-1689016,1689095-1689231,1689612-1689701,
           1689795-1689962,1690366-1690560
          Length = 1809

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = -1

Query: 758 YSIMAFASKGNLVN*LILKKISNVTSVLQHRIYCCRPHIPLFKVYVRDL*TRIKTILDYN 579
           Y+I + AS    V  L+++ +S++   ++HR     P + L+++Y     +   TI+  N
Sbjct: 50  YAITSLASPAASVRKLVMEILSHINKRVKHRPEISLPMLDLWRIYTE---STSSTIV-RN 105

Query: 578 KCIISI 561
            CI+ I
Sbjct: 106 FCIVYI 111


>11_03_0017 +
           8990852-8990938,8991056-8991243,8991687-8991795,
           8992448-8992832,8993240-8993309,8993410-8993477,
           8995009-8995124,8995211-8995317,8995488-8995627,
           8995794-8996044
          Length = 506

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
 Frame = -1

Query: 413 LREYLLYFI----SSF*YIVLLFNECNAIFY 333
           + +YLLY+I    S+F  IVL FN+C+ + Y
Sbjct: 229 MEDYLLYWIGQDNSAFANIVLTFNKCDIVRY 259


>02_01_0040 +
           274710-274762,274990-275070,275366-275505,275655-275696,
           276393-276496,276783-276845,277308-277388
          Length = 187

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 699 NQQCH*RITASHILL*TSHPLIQSLCERLVNSNKNYF 589
           N Q H  +    IL+   +PLI+   ++ V+SNK+YF
Sbjct: 107 NTQKHFMLLNLKILVSLMYPLIRYAVQQYVSSNKDYF 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,696,865
Number of Sequences: 37544
Number of extensions: 291417
Number of successful extensions: 351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)