Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12g06f
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 148 6e-37
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 141 8e-35
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 132 5e-32
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 113 3e-26
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 99 6e-22
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 87 2e-18
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 66 3e-12
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 31 0.10
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 31 0.10
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 30 0.23
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 30 0.31
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 28 1.2
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 27 2.2
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 2.9
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 2.9
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 27 2.9
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 5.0
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 25 6.6
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 25 6.6
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 6.6
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 8.8
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 25 8.8
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 25 8.8
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 8.8
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 8.8
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 8.8
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 25 8.8
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c... 25 8.8
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 8.8
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 148 bits (359), Expect = 6e-37
Identities = 69/145 (47%), Positives = 99/145 (68%), Gaps = 3/145 (2%)
Frame = +3
Query: 192 GYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYP---ERVIPDAT 362
GYVGFA+LPNQ HR+ V++GF F ++V+GESG GKSTLVN+L D+YP + + D
Sbjct: 74 GYVGFASLPNQWHRRCVRQGFNFNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTGDFG 133
Query: 363 EKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRD 542
TV +++S VEI E G+ L+L V+DTPG+GD IDNTDC++ ++ I+ +++++L
Sbjct: 134 VNPEPTVMINSSAVEIVENGISLQLNVIDTPGFGDFIDNTDCWQPVLTDIEGRYDQYLEL 193
Query: 543 ESGLNRRNIVDNRIHCCFYFISPFG 617
E R I D R+H C +FI P G
Sbjct: 194 EKHNPRSTIQDPRVHACIFFIQPTG 218
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 141 bits (341), Expect = 8e-35
Identities = 67/149 (44%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Frame = +3
Query: 177 NLETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLY----PER 344
N E +VG A+LPNQ H+ + G FTLM+ GESGLGK+T N+LF T + PE+
Sbjct: 2 NEEETNFVGIADLPNQRHKIVSRNGVAFTLMLCGESGLGKTTFCNTLFSTTIKSHMGPEK 61
Query: 345 VIPDATEKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQF 524
V EKT V+++ + E+EE+ LRLTV+DTPG+GD I+N+ C+ S++++I++Q
Sbjct: 62 VRAKHAEKT---VEIEITKAELEEKNFHLRLTVIDTPGFGDFINNSGCWESVVEFIEDQH 118
Query: 525 ERFLRDESGLNRRNIVDNRIHCCFYFISP 611
E ++R + +RR I+D RIH C YF+ P
Sbjct: 119 ESYMRQDQQPDRRKIIDMRIHACLYFLRP 147
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 132 bits (318), Expect = 5e-32
Identities = 60/142 (42%), Positives = 92/142 (64%), Gaps = 1/142 (0%)
Frame = +3
Query: 195 YVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTN 374
YVGF ++ +Q++RK +++GF+F +MVVG SG GKSTL+N+LF L + D
Sbjct: 12 YVGFDSITSQINRKLIRRGFQFNVMVVGPSGSGKSTLINTLFSAHLMDSKGRLDYQAPYR 71
Query: 375 QTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGL 554
QT ++ ++ + E V+L+L ++DTPGYGD I+N C+ II+YI +Q +LR E
Sbjct: 72 QTTEIHVTSQVVRENRVQLQLNLIDTPGYGDQINNDKCWEPIIKYIRDQHSSYLRRELNS 131
Query: 555 NR-RNIVDNRIHCCFYFISPFG 617
+R + + D R+HCC +FI P G
Sbjct: 132 HREKRLQDTRVHCCLFFIRPTG 153
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 113 bits (271), Expect = 3e-26
Identities = 55/135 (40%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Frame = +3
Query: 210 NLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEK-TNQTVK 386
+LP++ +K T+M+ G SG GK+T N+LF T L PE+ A E +T++
Sbjct: 15 SLPSKRENLIKRKECGLTIMLCGASGTGKTTFFNTLFATSLQPEKSYETAKETIAKKTLE 74
Query: 387 LDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRN 566
+ + IEE G + LTV+DTPG+GD IDNT C+ ++ +Y+DEQ ER+L + R
Sbjct: 75 VKKNKAVIEEDGFHINLTVLDTPGFGDFIDNTSCWNTVAEYLDEQHERYLIHDQNSLRVP 134
Query: 567 IVDNRIHCCFYFISP 611
D R+H C YFI+P
Sbjct: 135 RKDTRVHVCLYFITP 149
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 98.7 bits (235), Expect = 6e-22
Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Frame = +3
Query: 120 EYNIKKLLKMSNETNKTFSNLETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKS 299
++ + +LL + + T T G + L + +KS KKG LMVVG+ GLG++
Sbjct: 8 DFGVVQLLFLHSNDTLTARTHITKGQIDI-ELTMRTTKKSSKKGIPLNLMVVGDVGLGRT 66
Query: 300 TLVNSLFLTDL--YPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAI 473
+N+L L + P + + T I E G K+ LTV+DTP +G+AI
Sbjct: 67 AFINTLCEKPLIRHNNNFDPAEASSVSPVEIVPYQTDIILEDGTKINLTVLDTPHFGEAI 126
Query: 474 DNTDCFRSIIQYIDEQFERFLRDESGLNRR-NIVDNRIHCCFYFISPFG 617
DN + F I+QYI+ Q++ L +ES + R D+R+H YFISP G
Sbjct: 127 DNENNFDIILQYIESQYDNVLEEESRIKRNARFCDDRVHALIYFISPTG 175
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 87.0 bits (206), Expect = 2e-18
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 1/159 (0%)
Frame = +3
Query: 144 KMSNETNKTFSNLETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFL 323
++ N K+ +G + +Q + + + G + L+VVGES LGK+T VNS
Sbjct: 81 EVPNSNGKSIPTFHPCNNIGINDFNHQHYSRVCRNGIDINLIVVGESSLGKTTFVNSFLQ 140
Query: 324 TDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSII 503
++ D + +T+ + + K LT+VDTPG+GD DN++C+R I
Sbjct: 141 SN--------DTNFRPKKTMDFVEHKATLSDGDQKFNLTIVDTPGFGDKSDNSNCWRPIA 192
Query: 504 QYIDEQFERFLRDESGLNRR-NIVDNRIHCCFYFISPFG 617
+ + + ++E ++R + +D+RIH C +FI+P G
Sbjct: 193 TNLLHRLNAYFQNEVKMDRETSEIDSRIHGCLFFINPNG 231
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 66.5 bits (155), Expect = 3e-12
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Frame = +3
Query: 243 KKGFEFTLMVVGESGLGKSTLVNSLFLTD-LYPERVIPDATEKTNQTVKLDASTVEIEER 419
KKG + +MV G S +NSL L E I ++ +++ +I E
Sbjct: 14 KKGKKLRIMVAGSSYTSYQACINSLCSKQILEAETEIDPLKAHIDRILEIREFNADILED 73
Query: 420 GVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRN-IVDNRIHCCF 596
+ LTV++ G+GD IDN+ F + Y++ QF++ L +ES + R + D R+
Sbjct: 74 EFHVDLTVIEVNGFGDKIDNSASFEVVTHYLESQFDQALIEESKIKRNSKFTDTRVDALL 133
Query: 597 YFISPFG 617
YFI+P G
Sbjct: 134 YFIAPRG 140
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 31.5 bits (68), Expect = 0.10
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = +3
Query: 264 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 443
L+VVGE+G GK+T + D Y + T+ A V EE GV+L TV
Sbjct: 511 LIVVGETGSGKTTQLAQFLYEDGYHRNGMIGCTQPRRVAAMSVAKRVS-EEMGVRLGSTV 569
Query: 444 VDTPGYGDAIDNTDCFRSIIQYIDE 518
GY ++ ++I+Y+ +
Sbjct: 570 ----GYSIRFEDVTGPDTVIKYMTD 590
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 31.5 bits (68), Expect = 0.10
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 258 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 413
F L+++G+SG+GKS L+ F D Y E I + +T +L+ TV+++
Sbjct: 9 FKLLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 30.3 bits (65), Expect = 0.23
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +3
Query: 264 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEK--TNQTVKLDASTVEI 410
L+VVG+ G GK+ L+ +F + +PER +P E T+ T ++ +E+
Sbjct: 17 LVVVGDGGCGKTCLL-IVFSSGTFPERYVPTVFENYITDITYGPNSKVIEL 66
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 29.9 bits (64), Expect = 0.31
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = +3
Query: 267 MVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 413
+++G +G GKST+V+++ + +P +++ A E + +K +T IE
Sbjct: 37 LIIGPNGTGKSTIVSAICIGLGWPPKLLGRAKE-AREFIKYGKNTATIE 84
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +3
Query: 264 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 413
L+++G+SG+GKS L+ P + + +T++LD ++++
Sbjct: 12 LLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQ 61
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 27.1 bits (57), Expect = 2.2
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +3
Query: 255 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLR 434
+F L+ +GE +GK++L+ + F+ D + D T + + + T+ +E+R V+L+
Sbjct: 11 KFKLVFLGEQSVGKTSLI-TRFMYDQF------DNTYQATIGIDFLSKTMYLEDRTVRLQ 63
Query: 435 LTVVDTPG 458
L DT G
Sbjct: 64 LW--DTAG 69
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 210 NLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLF 320
NLP ++ SV + + +VG +G GKSTL +LF
Sbjct: 1236 NLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALF 1272
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 2.9
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 270 VVGESGLGKSTLVNSLFLTDLYP-ERVIPDATEKTN-QTVKLDASTVEIEERGVKLRLTV 443
+VG SG GKSTLV L T YP E + D TN T L ++++ L T+
Sbjct: 1133 IVGISGSGKSTLVELLRKT--YPSEDIYIDGYPLTNIDTNWLLKKVAIVDQKPHLLGSTI 1190
Query: 444 VDTPGYG 464
+++ YG
Sbjct: 1191 LESLLYG 1197
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 255 EFTLMVVGESGLGKSTLVNSLFLTDLYPE 341
E+ L+VVG+ G+GKS L L + E
Sbjct: 8 EYKLVVVGDGGVGKSALTIQLIQSHFVDE 36
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 611 R*YEVETAMNAIVHNVTTV 555
R Y VE A NAIVH V++V
Sbjct: 1574 RIYGVEAARNAIVHEVSSV 1592
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 6.6
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 339 ERVIPDATEKTNQTVKLDAST-VEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYID 515
E ++ D + KL A + +EE V+ GY CFRSI+ + +
Sbjct: 147 ETLMTDIKDVVEHAAKLGAQRLITLEELPVQWHNNPYIIRGYRFYTSKRKCFRSILSWHN 206
Query: 516 EQF 524
E F
Sbjct: 207 ETF 209
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 243 KKGFEFTLMVVGESGLGKSTLVN 311
KK ++++GESG+GK++++N
Sbjct: 4 KKKHLLKVIILGESGVGKTSIMN 26
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 6.6
Identities = 22/85 (25%), Positives = 41/85 (48%)
Frame = +3
Query: 264 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 443
++VVGE+G GKST + FL + + A + + ++ + E+G +L V
Sbjct: 115 IVVVGETGSGKSTQIPQ-FLNECPYAQEGCVAITQPRRVAAVNLAKRVAAEQGCRLGEQV 173
Query: 444 VDTPGYGDAIDNTDCFRSIIQYIDE 518
GY D+T ++ I+Y+ +
Sbjct: 174 ----GYSIRFDDTTSKKTRIKYLTD 194
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 270 VVGESGLGKSTLVNSLF 320
+VG +G GKSTL +LF
Sbjct: 1258 IVGRTGAGKSTLAMALF 1274
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 210 NLPNQVHRK-SVKKGFEFTLMVVGESGLGKSTLVN 311
NL + ++R S + + +VG++G GKSTL+N
Sbjct: 400 NLDHALYRDLSFGIDMDSRVAIVGKNGTGKSTLLN 434
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 25.0 bits (52), Expect = 8.8
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 195 YVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTN 374
+VG A QV +KK +G +GK LV ++ + ++IP T+
Sbjct: 40 FVGTAGPGRQVGNWIIKK-------TIGAGSMGKVKLVVNILTGEKAALKMIPFTPNNTS 92
Query: 375 QTVKL 389
QTV++
Sbjct: 93 QTVRV 97
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 270 VVGESGLGKSTLVNSL 317
++GESG GK+TL+N L
Sbjct: 916 LMGESGAGKTTLLNVL 931
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 255 EFTLMVVGESGLGKSTLVNSL 317
+FTL VVG +G GKSTL +L
Sbjct: 608 QFTL-VVGSTGSGKSTLAMAL 627
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +3
Query: 522 FERFLRDESGLNRRNIVDNRIHCCF----YFISP 611
F++ L+D G R +I+DN C FISP
Sbjct: 1188 FQKLLKDAKGQLRIHIIDNMSRICLRETSLFISP 1221
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 301 VDLPSPLSPTTIRVNSKPFFTDF 233
+ +P PL+P+ +N +PF F
Sbjct: 188 MSVPPPLTPSASTINDQPFSNSF 210
>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = +1
Query: 52 FKLNLNIPNHCLFSHRNYRKFKLNIILKNC 141
+ +N + N +F H ++R F+L ++ C
Sbjct: 29 YNMNPELENPGMFKHVDWRDFRLEFVILAC 58
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 8.8
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
Frame = +3
Query: 147 MSNETNKTFSNLETPGYVGFANLPNQVHRKSVKKGFE--FTLMVVGESGLGKSTLVNSLF 320
+ N NK F + T +L +SV+K +T+ ++G +G+GKST + +
Sbjct: 304 VKNTVNKAFRDRLTQILTPSTSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIA 363
Query: 321 LTDLYPERVIPDATEKTNQTVKLDASTVEIEE-RGVKLRLTVVDTPGYGDAIDNTDCFRS 497
L I A T ++ ++ V ++ + +K + GYG D++ ++
Sbjct: 364 YWLLSNNFRILVAACDTFRSGAIEQLGVHVKNLQSLKGSSIELFAQGYGK--DSSFVVKN 421
Query: 498 IIQYIDE-QFERFLRDESG 551
++Y + F+ L D +G
Sbjct: 422 AVEYAKQNSFDVILIDTAG 440
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,176
Number of Sequences: 5004
Number of extensions: 44284
Number of successful extensions: 260
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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