Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g06f
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.2  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   3.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   3.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = +3

Query: 471 IDNTDCFRSIIQYIDEQFERFLRDESGLNRRNIVDNRIHCC 593
           + N D FR+I +   E F  +  +    +  + +   + CC
Sbjct: 106 VKNDDNFRNISEKYQEIFNGYFLNSESKDFIDFIQKNLQCC 146


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
 Frame = +1

Query: 181 WKHLVMLDLP-ICLIRYTENL*KRVSSSPL-----WWSGKVDWANLLWSTLC 318
           WK    +  P IC+  +T N+ K V    L     WWS  + W   L S LC
Sbjct: 491 WKICWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHVLGWLCGLSSMLC 542


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
 Frame = +1

Query: 181 WKHLVMLDLP-ICLIRYTENL*KRVSSSPL-----WWSGKVDWANLLWSTLC 318
           WK    +  P IC+  +T N+ K V    L     WWS  + W   L S LC
Sbjct: 544 WKICWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHVLGWLCGLSSMLC 595


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 426 KLRLTVVDTPGYGDAIDN 479
           K  +T++D PG+ D I N
Sbjct: 84  KYYVTIIDAPGHRDFIKN 101


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 426 KLRLTVVDTPGYGDAIDN 479
           K  +T++D PG+ D I N
Sbjct: 11  KYYVTIIDAPGHRDFIKN 28


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 426 KLRLTVVDTPGYGDAIDN 479
           K  +T++D PG+ D I N
Sbjct: 27  KYYVTIIDAPGHRDFIKN 44


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 426 KLRLTVVDTPGYGDAIDN 479
           K  +T++D PG+ D I N
Sbjct: 84  KYYVTIIDAPGHRDFIKN 101


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 120 EYNIKKLLKMSNETNKTFSNLETPGYVGFANLPN 221
           +Y   + + M N  NK+ ++ +   Y  F NL N
Sbjct: 175 DYLDNQEVSMENTENKSCTDSDIEKYKMFCNLEN 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,211
Number of Sequences: 438
Number of extensions: 3034
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)