Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12g05r
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 56 4e-09
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 50 4e-07
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 29 0.54
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 27 2.9
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 3.8
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 6.6
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 6.6
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 25 8.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 8.8
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 56.4 bits (130), Expect = 4e-09
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Frame = -3
Query: 751 LDGLSNMLKMAG-------DNAEQVA-NIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQY 596
LD + N+LK+ +N Q A +EE GG+D I DLQ+ +IY AY IIE+Y
Sbjct: 440 LDAIENILKVGEMDRTMDLENINQYAVYVEEAGGMDMIHDLQSSGNNDIYLKAYSIIEKY 499
Query: 595 FAGEEEDASLVPAAGEAAFQFDGG 524
F+ E+ L P AF F G
Sbjct: 500 FSDEDAVEDLAPETENGAFTFGNG 523
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 50.0 bits (114), Expect = 4e-07
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Frame = -3
Query: 751 LDGLSNMLKMA----GDNAEQV----ANIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQY 596
LDG+ N+L++ +N +++ +E+ GG+D I + Q EIY+ AY+IIE++
Sbjct: 440 LDGIENILRVGELDRANNPDKINLYAVYVEDAGGMDLIHECQNSSNSEIYQKAYNIIEKF 499
Query: 595 FAGEEEDASLVPAAGEAAFQFDGGAADKEPPPFRF 491
F E+E L P F F G + F+F
Sbjct: 500 FGEEDEIEELEPETVGDTFTF--GTTQEPAGDFQF 532
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 29.5 bits (63), Expect = 0.54
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = -3
Query: 733 MLKMAGDNAEQVANIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAA 554
+L + G + ++IE IE + I ++ IE+ A E S VP+A
Sbjct: 9 LLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSA 68
Query: 553 GEAAFQFDGGAADKE 509
G A GGAA E
Sbjct: 69 GAVATPAAGGAAGAE 83
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 516 SAAPPSNWKAASPAAGTSDASSSSPA 593
S PPS +A+PA + ASS++PA
Sbjct: 60 SGPPPSYSNSAAPATPAASASSAAPA 85
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +3
Query: 423 SGAASVG*AWGQHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSPA 593
S A V +G H S PS G S + P S SPA G S+ +PA
Sbjct: 266 STIAEVSPMYGSHAAPYASTPS--AAVGSSRGSTPASATVPISPARGFPTTSAYNPA 320
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 339 KLGVHLL*TTNRPVFGEAVEKVFIRCLVSGAAS 437
KL + + +TN PVFG AV+ V ++S ++S
Sbjct: 158 KLSSNSIKSTNAPVFGTAVKNVTGENILSASSS 190
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 507 GSLSAAPPSNWKAASPAAGTSDASSSSPA 593
G+ S APP++ + +PA G+ S PA
Sbjct: 180 GTTSNAPPASSTSTTPATGSGGFSFGKPA 208
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 458 LTPRSPHARRSRHKTSDKHFFN 393
LTP+ H +S + KHFF+
Sbjct: 177 LTPQETHKNKSFERDDQKHFFD 198
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 462 GVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSP 590
G+ G P + G S SAAPPS +P + +S+ P
Sbjct: 103 GLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPP 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,889
Number of Sequences: 5004
Number of extensions: 49728
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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