Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12g05r
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 85 7e-17
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 85 7e-17
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 85 7e-17
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 40 0.003
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 40 0.003
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 40 0.003
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 36 0.041
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 36 0.041
AL110484-22|CAB54414.2| 305|Caenorhabditis elegans Hypothetical... 30 1.5
AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical... 30 2.0
AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical ... 30 2.0
AL032650-1|CAE54929.1| 551|Caenorhabditis elegans Hypothetical ... 30 2.0
AC024200-6|AAF35998.1| 314|Caenorhabditis elegans Hypothetical ... 29 2.7
AL021387-1|CAE17853.1| 187|Caenorhabditis elegans Hypothetical ... 29 4.7
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 28 8.2
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 28 8.2
AF036692-6|AAB88328.1| 397|Caenorhabditis elegans Hypothetical ... 28 8.2
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 84.6 bits (200), Expect = 7e-17
Identities = 40/75 (53%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Frame = -3
Query: 751 LDGLSNMLKMAGDNAEQVAN-IEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEED 575
LDG++N+LKMAG+ AEQV + IEECGG+DKIE+LQ HE +IYK+A++II+ +F+ ++E
Sbjct: 425 LDGINNILKMAGEAAEQVTSEIEECGGLDKIENLQNHENEDIYKLAFEIIDNFFSSDDET 484
Query: 574 ASLVPAAGEAAFQFD 530
+ V A +AF D
Sbjct: 485 GN-VEGAQSSAFGGD 498
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 84.6 bits (200), Expect = 7e-17
Identities = 40/75 (53%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Frame = -3
Query: 751 LDGLSNMLKMAGDNAEQVAN-IEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEED 575
LDG++N+LKMAG+ AEQV + IEECGG+DKIE+LQ HE +IYK+A++II+ +F+ ++E
Sbjct: 425 LDGINNILKMAGEAAEQVTSEIEECGGLDKIENLQNHENEDIYKLAFEIIDNFFSSDDET 484
Query: 574 ASLVPAAGEAAFQFD 530
+ V A +AF D
Sbjct: 485 GN-VEGAQSSAFGGD 498
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 84.6 bits (200), Expect = 7e-17
Identities = 40/75 (53%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Frame = -3
Query: 751 LDGLSNMLKMAGDNAEQVAN-IEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEED 575
LDG++N+LKMAG+ AEQV + IEECGG+DKIE+LQ HE +IYK+A++II+ +F+ ++E
Sbjct: 334 LDGINNILKMAGEAAEQVTSEIEECGGLDKIENLQNHENEDIYKLAFEIIDNFFSSDDET 393
Query: 574 ASLVPAAGEAAFQFD 530
+ V A +AF D
Sbjct: 394 GN-VEGAQSSAFGGD 407
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Frame = -3
Query: 691 IEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYF----AGEEE 578
+EE GG+D +E LQ + +IY AY II Q+F AGE+E
Sbjct: 476 VEENGGLDSLERLQESQSEQIYTQAYRIITQFFTDDDAGEKE 517
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Frame = -3
Query: 691 IEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYF----AGEEE 578
+EE GG+D +E LQ + +IY AY II Q+F AGE+E
Sbjct: 476 VEENGGLDSLERLQESQSEQIYTQAYRIITQFFTDDDAGEKE 517
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Frame = -3
Query: 691 IEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYF----AGEEE 578
+EE GG+D +E LQ + +IY AY II Q+F AGE+E
Sbjct: 476 VEENGGLDSLERLQESQSEQIYTQAYRIITQFFTDDDAGEKE 517
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 35.5 bits (78), Expect = 0.041
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = -3
Query: 730 LKMAGDNAEQVA-NIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAA 554
+++ DN+ VA +EE G +K+E L + ++I+ AY II++++ ++ + P A
Sbjct: 439 MRLLPDNSNPVAIKLEEIGCREKLEFLCESQSVDIHARAYTIIDRFYVDDDAPLNDDPFA 498
Query: 553 G 551
G
Sbjct: 499 G 499
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 35.5 bits (78), Expect = 0.041
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = -3
Query: 730 LKMAGDNAEQVA-NIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAA 554
+++ DN+ VA +EE G +K+E L + ++I+ AY II++++ ++ + P A
Sbjct: 439 MRLLPDNSNPVAIKLEEIGCREKLEFLCESQSVDIHARAYTIIDRFYVDDDAPLNDDPFA 498
Query: 553 G 551
G
Sbjct: 499 G 499
>AL110484-22|CAB54414.2| 305|Caenorhabditis elegans Hypothetical
protein Y38E10A.22 protein.
Length = 305
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = -3
Query: 751 LDGLSNMLKMAGDNAEQVANIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDA 572
LDG S + A D+ E EE + K E +Q H + I ++E++F A
Sbjct: 134 LDGRSRFVDRADDSEETKEFYEETMKMIKFEIMQMHPDI-ITPQTRKLLEEHFKESNLRA 192
Query: 571 SLVPAAGEAAFQFDGGAADKEPP 503
L+P G + +PP
Sbjct: 193 GLMPIGGWPVIPKNEWPQPPQPP 215
>AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -3
Query: 733 MLKMAGDNAEQVANIEECGGIDKI---EDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLV 563
M +++ + + N+ GI+KI D++ E +++ K +E+ A EE+DAS
Sbjct: 1 MSELSNGPKKSIGNMFLRSGIEKILADRDIKRKENLQLKKACESALEELKAAEEQDAS-- 58
Query: 562 PAAGEAAFQFDGGAA 518
P++ GG A
Sbjct: 59 PSSNGEHLPDAGGTA 73
>AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -3
Query: 733 MLKMAGDNAEQVANIEECGGIDKI---EDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLV 563
M +++ + + N+ GI+KI D++ E +++ K +E+ A EE+DAS
Sbjct: 1 MSELSNGPKKSIGNMFLRSGIEKILADRDIKRKENLQLKKACESALEELKAAEEQDAS-- 58
Query: 562 PAAGEAAFQFDGGAA 518
P++ GG A
Sbjct: 59 PSSNGEHLPDAGGTA 73
>AL032650-1|CAE54929.1| 551|Caenorhabditis elegans Hypothetical
protein Y6B3A.1b protein.
Length = 551
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -3
Query: 733 MLKMAGDNAEQVANIEECGGIDKI---EDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLV 563
M +++ + + N+ GI+KI D++ E +++ K +E+ A EE+DAS
Sbjct: 1 MSELSNGPKKSIGNMFLRSGIEKILADRDIKRKENLQLKKACESALEELKAAEEQDAS-- 58
Query: 562 PAAGEAAFQFDGGAA 518
P++ GG A
Sbjct: 59 PSSNGEHLPDAGGTA 73
>AC024200-6|AAF35998.1| 314|Caenorhabditis elegans Hypothetical
protein Y71F9AL.9 protein.
Length = 314
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 393 VEKVFIRCLVSGAASVG*AWG-QHGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTS 569
V K L GA+S+ W GV V +A K K + +AAP + A +PA
Sbjct: 41 VGKTISAFLEDGASSILGGWTTSDGVSVTAAKKKKNKSKKTETAAPETTQSAPAPAKAAP 100
Query: 570 DASSSSPA 593
+ ++PA
Sbjct: 101 APTVAAPA 108
>AL021387-1|CAE17853.1| 187|Caenorhabditis elegans Hypothetical
protein H01A20.2 protein.
Length = 187
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = -3
Query: 730 LKMAGDNAEQVANIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAG 551
LK+AG+ E+ I+ +++++Q EK+ I + + + + E D S +P
Sbjct: 47 LKLAGNVVEETLKID-----GQLKNIQLSEKLGIVRSEINDMMKKTGSEPLDLSKLPPTY 101
Query: 550 EAAFQFDGGAADK 512
AAF F A +K
Sbjct: 102 AAAFSFLAPANEK 114
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 287 SLGKKFHINVKCKNNLRKTRRTLVVNNQQT 376
SL +F V C NN ++ RT + N+Q+T
Sbjct: 704 SLDHEFRETVSCVNNCLESARTALTNSQRT 733
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 287 SLGKKFHINVKCKNNLRKTRRTLVVNNQQT 376
SL +F V C NN ++ RT + N+Q+T
Sbjct: 704 SLDHEFRETVSCVNNCLESARTALTNSQRT 733
>AF036692-6|AAB88328.1| 397|Caenorhabditis elegans Hypothetical
protein C44B12.5 protein.
Length = 397
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 474 GSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSP 590
G+AP+ G+ AAPP+ W A AA T A++ +P
Sbjct: 346 GAAPAAPSTSWGAAPAAPPT-WGGAPTAAPTWGAANDAP 383
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,132,850
Number of Sequences: 27780
Number of extensions: 293050
Number of successful extensions: 1034
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -