Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12g05f
(644 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 104 5e-23
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 104 5e-23
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 69 2e-12
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 69 2e-12
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 69 2e-12
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 51 6e-07
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 47 1e-05
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 47 1e-05
AF024493-2|AAB70323.1| 322|Caenorhabditis elegans Hypothetical ... 39 0.003
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ... 33 0.23
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 32 0.40
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 31 0.53
AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical... 31 0.92
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 30 1.2
AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical ... 30 1.2
Z75547-11|CAA99905.4| 394|Caenorhabditis elegans Hypothetical p... 30 1.6
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 30 1.6
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 30 1.6
AF003389-4|AAN63407.1| 598|Caenorhabditis elegans Hypothetical ... 29 2.8
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ... 29 2.8
AC006621-3|AAK68263.1| 368|Caenorhabditis elegans Hypothetical ... 29 2.8
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81552-3|CAB04486.1| 470|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z79755-7|CAB02103.1| 466|Caenorhabditis elegans Hypothetical pr... 29 3.7
L23645-8|AAK26133.1| 282|Caenorhabditis elegans Peroxisome asse... 28 4.9
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81546-3|CAB04451.1| 321|Caenorhabditis elegans Hypothetical pr... 27 8.6
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 27 8.6
AC024791-8|AAF60652.1| 230|Caenorhabditis elegans Hypothetical ... 27 8.6
AC024761-2|AAF59463.1| 174|Caenorhabditis elegans Hypothetical ... 27 8.6
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 104 bits (250), Expect = 5e-23
Identities = 55/121 (45%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Frame = +2
Query: 278 AKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLA 457
+ NR +KN K+ + +RNE V +RK+KREE + KRRN+ D E
Sbjct: 2 SSNRQAYYKNNAKE-QIGKEKRNEEVVSIRKDKREEAISKRRNINTQIEDDSETSTTPPG 60
Query: 458 TTDLD--ELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSRA 631
D + L + AA + +P QL AVQQ RK+LS D+NPPID+LI +GILP+LVQCLS
Sbjct: 61 PFDANLLRLTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQCLSST 120
Query: 632 D 634
D
Sbjct: 121 D 121
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 104 bits (250), Expect = 5e-23
Identities = 55/121 (45%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Frame = +2
Query: 278 AKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLA 457
+ NR +KN K+ + +RNE V +RK+KREE + KRRN+ D E
Sbjct: 2 SSNRQAYYKNNAKE-QIGKEKRNEEVVSIRKDKREEAISKRRNINTQIEDDSETSTTPPG 60
Query: 458 TTDLD--ELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSRA 631
D + L + AA + +P QL AVQQ RK+LS D+NPPID+LI +GILP+LVQCLS
Sbjct: 61 PFDANLLRLTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQCLSST 120
Query: 632 D 634
D
Sbjct: 121 D 121
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 69.3 bits (162), Expect = 2e-12
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Frame = +2
Query: 287 RMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV--------PISYSTDEEEI 442
R+ +KN K +E+RRRR E +VE+RK K + + KRRN+ S + E+I
Sbjct: 21 RLQQYKNLTKH-EELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPEKI 79
Query: 443 DKNLATTDLDELVMNAANAENP--EAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQ 616
++T L + A + NP + + + RK LS KNPPIDE+I G+L LVQ
Sbjct: 80 SHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLLQALVQ 139
Query: 617 CLS 625
LS
Sbjct: 140 ALS 142
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 69.3 bits (162), Expect = 2e-12
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Frame = +2
Query: 287 RMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV--------PISYSTDEEEI 442
R+ +KN K +E+RRRR E +VE+RK K + + KRRN+ S + E+I
Sbjct: 21 RLQQYKNLTKH-EELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPEKI 79
Query: 443 DKNLATTDLDELVMNAANAENP--EAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQ 616
++T L + A + NP + + + RK LS KNPPIDE+I G+L LVQ
Sbjct: 80 SHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLLQALVQ 139
Query: 617 CLS 625
LS
Sbjct: 140 ALS 142
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 69.3 bits (162), Expect = 2e-12
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Frame = +2
Query: 287 RMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV--------PISYSTDEEEI 442
R+ +KN K +E+RRRR E +VE+RK K + + KRRN+ S + E+I
Sbjct: 21 RLQQYKNLTKH-EELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPEKI 79
Query: 443 DKNLATTDLDELVMNAANAENP--EAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQ 616
++T L + A + NP + + + RK LS KNPPIDE+I G+L LVQ
Sbjct: 80 SHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLLQALVQ 139
Query: 617 CLS 625
LS
Sbjct: 140 ALS 142
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 545 LLSCDKNPPIDELIAAGILPILVQCLSRAD 634
+LS D+NPPID+LI +GILP+LVQCLS D
Sbjct: 1 MLSTDRNPPIDDLIGSGILPVLVQCLSSTD 30
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = +2
Query: 281 KNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 454
+ R ++K+ +D +EMRR+R E V++RKN+R+E ++ R + + S EE + L
Sbjct: 10 EERSKMYKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITVQRSLSHEETSELL 67
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = +2
Query: 281 KNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 454
+ R ++K+ +D +EMRR+R E V++RKN+R+E ++ R + + S EE + L
Sbjct: 10 EERSKMYKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITVQRSLSHEETSELL 67
>AF024493-2|AAB70323.1| 322|Caenorhabditis elegans Hypothetical
protein F23F1.5 protein.
Length = 322
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +2
Query: 287 RMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTD 466
R +KN K ++ +RR E T+E +KN R +T K RN+ T +E+ ++ + TT
Sbjct: 28 RYSQYKNLTKAAEQQAKRREE-TLERQKNGRFDTFMKLRNLAFDDVTSDEDDEQKIETTT 86
Query: 467 LDE 475
++
Sbjct: 87 AEK 89
>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
protein Y113G7C.1 protein.
Length = 1494
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +2
Query: 242 ETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISY 421
+ A ++ D+ + +M+V + A KD E R ++++ E R+ K EE +K +
Sbjct: 1033 QDADIERAEADEQRRKMNV-ERAKKD--EERAKKDKRDAEERRKKDEERAKKDKEDAKKA 1089
Query: 422 STDEEEIDK 448
D+E+IDK
Sbjct: 1090 KEDQEKIDK 1098
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/96 (21%), Positives = 48/96 (50%)
Frame = +2
Query: 257 DKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEE 436
DK + K + ++ D EM RRR + + K +++ +++R V S S DE+
Sbjct: 230 DKKKWKKNKAKRSKRDDSSDDDSEMERRRKKSKKSKKSKKFKKSEKRKRAVNDSSSDDED 289
Query: 437 EIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRK 544
E +K + + + +++E+ E + ++ ++ +K
Sbjct: 290 EEEKPEKRSKKSKKAVIDSSSEDEEEEKSSKKRSKK 325
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +2
Query: 368 KNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANA 499
+ +R + +KR++ S T +EE ++LATTD + V+N A++
Sbjct: 260 ERERARSRRKRKDEASSAVTSDEEDQEDLATTDSENPVINGASS 303
>AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical
protein B0511.11 protein.
Length = 368
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 374 KREETLQKRRNVPIS--YSTDEEEIDKNLATTDLDE 475
K+E+ KR NVP++ YS + KN +TT L E
Sbjct: 98 KKEDDKSKRENVPLTVVYSNPSISVSKNFSTTPLAE 133
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 30.3 bits (65), Expect = 1.2
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Frame = +2
Query: 239 VETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKN-KREETLQKRRNVPI 415
+E+ ++ + K R K+ +EMR+R ++ E+R N +R + ++K
Sbjct: 197 MESEVDQQLELTEMKARQEERDRLTKEKEEMRQRMSDEMSEMRNNIERLQKMEKALEREN 256
Query: 416 SYSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIA-A 592
++E+ L + + + AEN +LA ++ + C+ + DEL A
Sbjct: 257 ERLNHQKELSDKLKVVNEENNDLRQNLAEN-HLELAMIKSELAQVRCEFDQKQDELSARR 315
Query: 593 GIL 601
GIL
Sbjct: 316 GIL 318
>AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical
protein ZC581.9 protein.
Length = 827
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 313 ACILEHMHAVFRLISRHFICARCLDTV 233
A ILE+M A+FR +S F+ +CLD +
Sbjct: 447 AFILENMSALFRRLSDEFVEDKCLDVI 473
>Z75547-11|CAA99905.4| 394|Caenorhabditis elegans Hypothetical
protein R11D1.10a protein.
Length = 394
Score = 29.9 bits (64), Expect = 1.6
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Frame = +2
Query: 260 KMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR-----NVPISYS 424
++A D+A+ + KD DE+ RR ++ + ++ RE+ R N S +
Sbjct: 200 RVAEDRARIEKKEEEMEHKDWDELEARRRKIFEDEKEKNREDDASIRESMVSANTEFSEA 259
Query: 425 TDEEEIDKNLATTDLDELVMNAANAENPE-AQLAAVQQCRKLLSCD 559
T EE + N D ++ V E + A+L + + + S D
Sbjct: 260 TKEEMNEINNILQDAEQRVAETKKQEEHDAAELRTLMKSTRQKSLD 305
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 245 TASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRK-NKREETLQKRRNVPISY 421
TA +DK Q + H KNA D+ E +RR E+ E ++ + R + K N +
Sbjct: 807 TAISDKENRSQIEME-HKLKNAESDLQEAKRRAEEIGAEKKELSDRLNEMLKNLNQSMQK 865
Query: 422 STDEEEI 442
S + +++
Sbjct: 866 SAENDKM 872
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 245 TASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRK-NKREETLQKRRNVPISY 421
TA +DK Q + H KNA D+ E +RR E+ E ++ + R + K N +
Sbjct: 819 TAISDKENRSQIEME-HKLKNAESDLQEAKRRAEEIGAEKKELSDRLNEMLKNLNQSMQK 877
Query: 422 STDEEEI 442
S + +++
Sbjct: 878 SAENDKM 884
>AF003389-4|AAN63407.1| 598|Caenorhabditis elegans Hypothetical
protein F23H11.4b protein.
Length = 598
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 356 VELRKNKREETLQKR-RNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQ 532
V L +K+E+ L R RN+ +S+ DE+ + + T D+ + + A + L V
Sbjct: 341 VSLTSSKKEKRLHCRLRNMQLSFHDDEDSTEPSNGTFDIKGIYLFRHMASDTPYILIHVG 400
Query: 533 QCRKLLS-CDKNPP 571
+ R ++S ++PP
Sbjct: 401 EKRNVISFIPEDPP 414
>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
protein F23H11.4a protein.
Length = 1003
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 356 VELRKNKREETLQKR-RNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQ 532
V L +K+E+ L R RN+ +S+ DE+ + + T D+ + + A + L V
Sbjct: 341 VSLTSSKKEKRLHCRLRNMQLSFHDDEDSTEPSNGTFDIKGIYLFRHMASDTPYILIHVG 400
Query: 533 QCRKLLS-CDKNPP 571
+ R ++S ++PP
Sbjct: 401 EKRNVISFIPEDPP 414
>AC006621-3|AAK68263.1| 368|Caenorhabditis elegans Hypothetical
protein C52A10.3 protein.
Length = 368
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 586 YELINRRVFITREQFSALLHS 524
YEL+ R +F+T EQ S +L+S
Sbjct: 199 YELVGREIFLTSEQLSKVLNS 219
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
H06O01.2 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 215 LCVITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQ 394
L V Y ++ S DK+ T + K R + ++ +R N V E K K+E+ +
Sbjct: 1205 LQVRVDYLLKLMSKDKVKTTEKKERKRKADDVPVGPEKKKRHTNNVPQEGEKKKKEKKEE 1264
Query: 395 K 397
K
Sbjct: 1265 K 1265
>Z81552-3|CAB04486.1| 470|Caenorhabditis elegans Hypothetical
protein F56G4.4 protein.
Length = 470
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/94 (20%), Positives = 38/94 (40%)
Frame = +2
Query: 239 VETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPIS 418
VE ++ D+ N+ K RRR + T +R ++ +V
Sbjct: 267 VEANRKEQNYVDKPNNKFKKLTKEEKKAQWEERRRQKDTERAEDEERRREAEEDEDVSDE 326
Query: 419 YSTDEEEIDKNLATTDLDELVMNAANAENPEAQL 520
S ++EE + + T + + LV+ ++ P +L
Sbjct: 327 ESDEDEEEFEIIGTPEREALVLREHSSTPPPEEL 360
>Z79755-7|CAB02103.1| 466|Caenorhabditis elegans Hypothetical
protein F43G9.10 protein.
Length = 466
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 302 KNAGKDVDEMRRRRNEVTVE--LRKNKREETLQKRRNV--PISYSTDEEEIDKNLATTDL 469
+ +D D RRRR E + E R+++R E +RR V P E+E +N ++
Sbjct: 69 RETDRDDDRRRRRRRESSDEEDRRRHRRHEDYGRRRQVEKPEVLGKVEDESSENEQESEE 128
Query: 470 DE 475
DE
Sbjct: 129 DE 130
>L23645-8|AAK26133.1| 282|Caenorhabditis elegans Peroxisome
assembly factor protein19 protein.
Length = 282
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/80 (26%), Positives = 31/80 (38%)
Frame = +2
Query: 302 KNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELV 481
+ A KD +M + + E K + + P+ D E + A L E
Sbjct: 56 QKAAKDFQKMLEQMVTLQEEAMKKAGADPSEGEGEQPLD-PNDPEALAMMDALKQLMECS 114
Query: 482 MNAANAENPEAQLAAVQQCR 541
N ANA NPE +A + R
Sbjct: 115 SNVANASNPEEFMAGLDMLR 134
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 314 KDVDEMRR---RRNEVTVELRKNKREETLQKRRNVPISYSTDEEEID 445
+D D+ RR RR++V + R+ KREE ++ + S DE+EID
Sbjct: 585 RDRDDARRKDRRRDDVRKKERREKREEEDDDQKTKD-AESKDEDEID 630
>Z81546-3|CAB04451.1| 321|Caenorhabditis elegans Hypothetical
protein F53A2.3 protein.
Length = 321
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 259 ICARCLDTVRGNYTKKQRINIKLLSSKLIKHVLRHYTSDGGLTS 128
+ RCL +V G +NI LL + + ++ H S G+T+
Sbjct: 265 LLVRCL-SVTGGDNSSNAVNISLLFKQHVSNLFNHARSKSGITN 307
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = -2
Query: 304 LEHMHAVFRLISR--HFICARCLDTVRGNYTKKQRINIKLLSSKLIKHVLRHYTSDGGLT 131
LEH F + + + IC R LD R YT N+ L +++I V DG L
Sbjct: 200 LEHSDCSFMVDNEAIYDICRRNLDLARPTYT-----NLNRLIAQVISSVTASLRFDGALN 254
Query: 130 SIFTKYST 107
T++ T
Sbjct: 255 VDLTEFQT 262
>AC024791-8|AAF60652.1| 230|Caenorhabditis elegans Hypothetical
protein Y47G6A.9 protein.
Length = 230
Score = 27.5 bits (58), Expect = 8.6
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Frame = +2
Query: 272 DQAKNRMHVFKNAGKDV--DEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEI- 442
D+ K + + N ++ +M NE+ +K +E+L KRR V S +E++
Sbjct: 95 DEIKRYLDKYSNIKREKLSIDMSHMPNELIWRRASSKSKESLAKRRKVANDDSMIKEKLK 154
Query: 443 ---DKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPID 577
+K D D+ A N ++ ++ +A ++ LS D N D
Sbjct: 155 KLEEKEAQNKDDDDDDEKADNDKDSGSEKSAAEEEENPLSDDDNQEED 202
>AC024761-2|AAF59463.1| 174|Caenorhabditis elegans Hypothetical
protein Y38C1AA.9 protein.
Length = 174
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/74 (21%), Positives = 32/74 (43%)
Frame = +2
Query: 317 DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAAN 496
+VD++ + VE+ + EE K+R V + +E + + + A L E
Sbjct: 29 EVDDVGNKTISGEVEISDVEAEEKTDKKREVDANDIQEEVKAELDKAVESLKETAREREE 88
Query: 497 AENPEAQLAAVQQC 538
EN ++++ C
Sbjct: 89 EENSLLSRSSLESC 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,552,387
Number of Sequences: 27780
Number of extensions: 311637
Number of successful extensions: 1194
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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