Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12g04r
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.24
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 28 1.3
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 28 1.7
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 28 1.7
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 28 1.7
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.0
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 27 3.0
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 27 3.9
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 26 5.2
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 26 5.2
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 6.8
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 26 6.8
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 25 9.0
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.0
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.24
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = -3
Query: 510 PAATQSSALTDTPTTSRLASITTSRC*S*IDRSRWTSTQSRRVCTRETPSMTSGPPPPAG 331
PA+T S+ + +P S S TTS I + ++T + S TS PPPPA
Sbjct: 319 PASTSSTGTSSSPLPSTSTSCTTSTS---IPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 375
Query: 330 DS 325
S
Sbjct: 376 TS 377
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = -3
Query: 510 PAATQSSALTDTPTTSRLASITTSRC*S*IDRSRWTSTQSRRVCTRETPSMTSGPPPPAG 331
P +T S+ +P + S TTS I + ++T + S TS PPPPA
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTS---IPPTGNSTTPVTPTVPPTSTSSTSTPPPPAS 321
Query: 330 DS 325
S
Sbjct: 322 TS 323
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -3
Query: 507 AATQSSALTDTPTTSRLASITTSRC*S*IDRSRWTSTQSRRVCTRETPSMTSGPPPPAGD 328
A + SSA P+TS AS+++ S S+ +S+ S R + + S SG +G
Sbjct: 500 ATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSRSGSSSSSSSRSGSTSSSGS 559
Query: 327 S 325
S
Sbjct: 560 S 560
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 27.9 bits (59), Expect = 1.7
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +3
Query: 300 SDVEPRFSVSPQPVAEARSSLTASPV 377
++VEP FS++P+P E + +++ S +
Sbjct: 11 NNVEPTFSITPEPTFETQPTISKSEI 36
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 207 GSNPRFMLRLVGYFSEHSVDVNLVST-TFCSTSDVEPRFSVSPQPVAEAR-SSLTASPVC 380
G + +F L +S S + +L FC T V P+ +PQ V E + + +T+SP
Sbjct: 667 GFSDQFYKELTQKYSLESGNSSLKPIYNFCETGKVTPQIYFAPQEVWEIKGAQITSSPAY 726
Query: 381 RHA 389
+ A
Sbjct: 727 KAA 729
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 594 PAVSTKRSLMSTPPHSHWMFATSSP*PSRTMCGYSL 701
P+VS K++ +++ S+WM T +T C Y++
Sbjct: 410 PSVSRKKAKLTSSQFSNWMLVTGVTGIGKTSCLYAI 445
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 3.0
Identities = 22/81 (27%), Positives = 29/81 (35%)
Frame = -3
Query: 546 SEPSPGTRPRTRPAATQSSALTDTPTTSRLASITTSRC*S*IDRSRWTSTQSRRVCTRET 367
S S G+ +T + +A + PT S A + S + S T
Sbjct: 156 SYSSSGSYSQTYQSNANYTASSPLPTASANAPLPVPPPRRVSQNSSYASGSVPAATAAST 215
Query: 366 PSMTSGPPPPAGDSPRTGAPR 304
S PPPPA PR A R
Sbjct: 216 ASPVKKPPPPAPPKPRRLAAR 236
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 40 RSRARPRNHRPDQTTSRLSRRTYSPSS 120
RSR R R+ RP ++ SR R SPS+
Sbjct: 197 RSRRRSRSRRPGRSRSRRRSRRPSPSA 223
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1
Query: 79 TTSRLSRRTYSPSSCFLSV*DLRYRPDKCLWTM---SCLRSTSESEGRTRASCCDWSGTS 249
+TSR ++++ SS S ++RYR +CL S L+ + S R CD++G
Sbjct: 445 STSRKIAQSHTGSSSTSSAANVRYRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCG 504
Query: 250 RS 255
++
Sbjct: 505 KA 506
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 387 RVCTRETPSMTSGPPPPAGDSPR 319
RV PS T GPPPP P+
Sbjct: 414 RVTQGAPPSHTYGPPPPVQPKPK 436
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 315 RFSVSPQPVAEARSSLTASPVCRHAGTVYWSSGTCRSSSNSAMS 446
R S SP+ + S+ T + HAGT + SS + R S A S
Sbjct: 27 RRSTSPRTSTGSSSTNTNTKTVDHAGTTFISSTSKRGRSTKAGS 70
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 271 FTSTECSEKYPTNRNMKRGF 212
F S C+E+YPT+ ++ R F
Sbjct: 1190 FCSRSCAERYPTDSSIMREF 1209
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/49 (26%), Positives = 20/49 (40%)
Frame = -2
Query: 472 DYKPPSKYNDIALLELDRQVPLDQYTVPACLHTGDAVNDERASATGWGL 326
+++ P+ Y L E + VPLD T+ C D GW +
Sbjct: 1318 EWRQPTGYKRTPLTECEGGVPLDAGTLHPCPGKEDDYYKAHPKPGGWSI 1366
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 573 RLAQSDTCISEPSPGTRPRTRPAATQSSALTDTPTTSRLASITT 442
+ + + T S P T ++ + A + TPTT+R +S TT
Sbjct: 163 KFSPNPTQTSPGKPSTSESSQTDTSTRPANSQTPTTTRASSYTT 206
>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 766 SRSKHCHHDADELIIGGTDAGVNEYPHMVLL 674
S SK+ +L + GTD G+NEY + L
Sbjct: 133 SLSKNIIDQLMDLFVKGTDHGINEYANFDFL 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,106
Number of Sequences: 5004
Number of extensions: 71419
Number of successful extensions: 276
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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