Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g04f
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    30   0.25 
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.3  
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    27   3.0  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   4.0  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   7.0  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.0  
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual      25   9.3  
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    25   9.3  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 197 INYLF-YILHPRIRNEHTQITLALTTNILID 108
           INYL   IL+P+ RNE    T +LTT I +D
Sbjct: 658 INYLISLILYPKARNESWTNTESLTTGITVD 688


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 551 EISRSKHCHHDADELIIGGTDAGVNEY 631
           E S SK+      +L + GTD G+NEY
Sbjct: 131 EFSLSKNIIDQLMDLFVKGTDHGINEY 157


>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 128 LMLVLFVCVHCEFEGEE 178
           +M +++VCVHC F  EE
Sbjct: 96  MMTLIYVCVHCGFAFEE 112


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/64 (23%), Positives = 27/64 (42%)
 Frame = +2

Query: 380 EYVPPSYDYQSNNGDKKCEDVPADLTSPKTGQKAWDKCIEYQEQLVYPCEKGVALTGEIS 559
           E++   +    N    K  D+ + L+ PK+        ++    + Y  +  + LTG  S
Sbjct: 100 EHLVAGFAKSRNESSLKLWDLNSLLSDPKSSPLMQSSTLDGVSSVCYKKDTPLLLTGSTS 159

Query: 560 RSKH 571
           RS H
Sbjct: 160 RSVH 163


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 554 SPR*ARRPFHTDTRAALDIQYICP-TPSARSWETSDPPVH 438
           SPR    P   +TRA+ +I+Y+   TP +  +E     VH
Sbjct: 111 SPRSPLTPLKGNTRASPEIRYVSDFTPPSSPFEDMQASVH 150


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -1

Query: 443 VHPRISCRHCWTGNHRRVVRTPLW*NSAYDALLW---RGEPVN*SSYQSSTQQDPRCRTN 273
           + P+I     W GN ++V+ +P   N ++  L +     + +   ++ ++T+     + N
Sbjct: 148 IKPKIITPFEWEGNFKQVIYSPTVYNGSFKRLFYLPDNNDLLKEFAHATNTKYKASLKDN 207

Query: 272 KSVVIS 255
           K VV++
Sbjct: 208 KIVVLA 213


>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 518 YPCEKGVALTGEISRSKHCHHDADELI 598
           Y  EK V L G+  + + C H  D+LI
Sbjct: 170 YAMEKAVKLLGQEIQPEECMHLGDDLI 196


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 410 SNNGDKKCEDVPADLTSPKTGQKAWDKCIEY 502
           SN   + C +    L  PKTGQK   +C  Y
Sbjct: 2   SNKLCQLCNERRPALVRPKTGQKICKECFYY 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,872
Number of Sequences: 5004
Number of extensions: 47187
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)