Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g04f
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0332 - 24145999-24146052,24146749-24147117,24147158-24147598     29   2.4  
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883...    28   5.5  
06_01_0788 - 5895600-5896378,5896519-5896846                           28   5.5  
08_02_0385 + 16574553-16574885                                         28   7.2  
08_01_0403 + 3584816-3584941,3585801-3585935,3586020-3586067,358...    28   7.2  
02_02_0312 + 8855664-8855807,8856402-8856465,8858399-8858547,885...    28   7.2  

>05_05_0332 - 24145999-24146052,24146749-24147117,24147158-24147598
          Length = 287

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 536 RPFHTDTRAALDIQYICPTPSARSWETSDPPVHPRISCRHCWTG 405
           R F    RA L+ +  CP   AR W  +   + PR +CR  W G
Sbjct: 175 RAFLVGHRAPLEPRVRCPYCGARVWSMTAAGLAPRSACR--WLG 216


>06_03_1457 - 30287185-30287287,30287691-30287759,30288212-30288351,
            30288447-30288641,30288743-30289363,30289688-30290257,
            30290332-30293638,30293764-30293863,30293978-30295014,
            30295256-30295604,30296299-30296374,30296456-30297022,
            30297094-30297238,30298281-30298405,30298491-30298582,
            30298646-30298828,30298946-30299058,30299499-30299649,
            30299720-30299882
          Length = 2701

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 431  CEDVPADLTS---PKTGQKAWDKCIEYQEQLVYPC 526
            C+ +P + +S    K GQK W +   Y ++++ PC
Sbjct: 1369 CQSLPNESSSCKMSKRGQKLWGRFSSYVKEIIAPC 1403


>06_01_0788 - 5895600-5896378,5896519-5896846
          Length = 368

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -2

Query: 517 HELLLIFNTFVPRLLPGLGRRQIRRYILAFLVAIVGLVIIGGWY 386
           HE  L  +   PR+    GRRQI+  +L F  A  G  I  G Y
Sbjct: 252 HEGFLYCHMVEPRMAIVDGRRQIQHGLLPFRKAFKGTFIAAGGY 295


>08_02_0385 + 16574553-16574885
          Length = 110

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = -2

Query: 280 ERTNLW*FPVSDVVQRGLT 224
           ER NLW F V DV  RGLT
Sbjct: 24  ERENLWHFRVQDVGLRGLT 42


>08_01_0403 +
           3584816-3584941,3585801-3585935,3586020-3586067,
           3587042-3587166,3587248-3587347
          Length = 177

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 202 SLYEYKEMSVRAERHQKQEITTDLFVRQ 285
           SL+E KE+S R+E H KQ    D+ +++
Sbjct: 82  SLFEDKEVSQRSEEHSKQLTVQDIQMKK 109


>02_02_0312 +
           8855664-8855807,8856402-8856465,8858399-8858547,
           8859258-8859674
          Length = 257

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = +1

Query: 427 EMRGCTGGSDVSQDRAEGVGQMY*ISRAARVSV*KGRRAHRGDQPQ*ALPPR--RGRAHH 600
           ++R   G S V Q R +GVG     SR    S  + R   RGD    +   R   G    
Sbjct: 181 DLRPPKGRSGVGQTRGDGVGDNRVNSRRESTSRRQQRHGARGDGGD-SDDSRWLAGGNSG 239

Query: 601 WRHRCRRQRISAH 639
           WR RC  QR   H
Sbjct: 240 WRSRCGCQRRRRH 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,324,529
Number of Sequences: 37544
Number of extensions: 327528
Number of successful extensions: 857
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)