Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g04f
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47356-8|CAD27185.1|  477|Caenorhabditis elegans Hypothetical pr...    34   0.075
Z47075-8|CAA87381.2|  477|Caenorhabditis elegans Hypothetical pr...    34   0.075
Z81115-2|CAB03292.1|  314|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z35663-16|CAA84726.2|  462|Caenorhabditis elegans Hypothetical p...    29   2.1  
Z78019-2|CAB01451.1|  347|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U10414-11|AAA19078.1|  187|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z81134-5|CAB54316.1|  101|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical p...    28   6.5  
U10401-8|AAA19055.1|  340|Caenorhabditis elegans Tata-binding pr...    28   6.5  
L07754-1|AAA03582.1|  340|Caenorhabditis elegans TATA-box bindin...    28   6.5  
AF303249-1|AAG50207.1|  340|Caenorhabditis elegans transcription...    28   6.5  

>Z47356-8|CAD27185.1|  477|Caenorhabditis elegans Hypothetical
           protein E02H1.7 protein.
          Length = 477

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
 Frame = +2

Query: 2   ISLASDRRWRQTRHVPYEPIK*CANNKLT--LNSLKMD-QSIYLLLMLVLFVCVHCEFEG 172
           IS+++DRRWRQ +   Y+ +  C  +++   L +LK+  Q I ++ ++VLF C  C  + 
Sbjct: 340 ISVSADRRWRQEK--LYKQMTDCCIDEVATPLRNLKLSPQEIVVIKIIVLFNC-GCSSDY 396

Query: 173 EECKKGNLLGVCTNIRKCQSAL 238
            E  + +   V T   K  SAL
Sbjct: 397 SEITEASRRIVLTFRNKVVSAL 418


>Z47075-8|CAA87381.2|  477|Caenorhabditis elegans Hypothetical
           protein E02H1.7 protein.
          Length = 477

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
 Frame = +2

Query: 2   ISLASDRRWRQTRHVPYEPIK*CANNKLT--LNSLKMD-QSIYLLLMLVLFVCVHCEFEG 172
           IS+++DRRWRQ +   Y+ +  C  +++   L +LK+  Q I ++ ++VLF C  C  + 
Sbjct: 340 ISVSADRRWRQEK--LYKQMTDCCIDEVATPLRNLKLSPQEIVVIKIIVLFNC-GCSSDY 396

Query: 173 EECKKGNLLGVCTNIRKCQSAL 238
            E  + +   V T   K  SAL
Sbjct: 397 SEITEASRRIVLTFRNKVVSAL 418


>Z81115-2|CAB03292.1|  314|Caenorhabditis elegans Hypothetical
           protein T05D4.2 protein.
          Length = 314

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 380 EYVPPSYDYQSNNGDKKCEDVPADLTS-PKTGQKAWDKCIEYQEQ 511
           E++  ++ Y  NN   +C ++  D+ S P+   K  D+C EYQ Q
Sbjct: 43  EHLTSAHSYTKNN-HCQCYEIAVDICSEPRVRVKGLDRCWEYQIQ 86


>Z35663-16|CAA84726.2|  462|Caenorhabditis elegans Hypothetical
           protein T04A8.3 protein.
          Length = 462

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +2

Query: 398 YDYQSNNGD--KKCEDVPADLTSPKTGQKAWDKCIEYQEQLVYPCEKGVALTGEISRSKH 571
           +D   NN D  KKC D+ A L+S  T ++   K ++     VYP +  +A+     R + 
Sbjct: 295 HDMSMNNDDAEKKCNDMGAHLSSFTTYEEL--KLLDEMILEVYPNDNNIAVWLGAKRREE 352

Query: 572 CHHDADELIIGGTDAGVNE 628
           C  D  +   GG    +++
Sbjct: 353 C-GDLSKNFTGGYSKDIHD 370


>Z78019-2|CAB01451.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK863.5 protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 179 ILHPRIRNEHTQITLALTTNILID-PFLKSSV 87
           IL P IR +H Q+T ALT   ++   F+ SS+
Sbjct: 216 ILRPEIREKHRQLTWALTVQTIVPIAFIFSSI 247


>U10414-11|AAA19078.1|  187|Caenorhabditis elegans Hypothetical
           protein F42A10.7 protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 579 WWQCLLRLISPVSATPFSHGYTSCS*YSIHLSHAFCPVLGDVRSAGTSSHFLSPLL 412
           WWQC    +  ++ATP+         Y IHLS    P++   +    +S ++SP L
Sbjct: 41  WWQCSSGPVQFLNATPYDSTGKQYE-YPIHLSQ---PIVVKTQINNPTSTYVSPNL 92


>Z81134-5|CAB54316.1|  101|Caenorhabditis elegans Hypothetical
           protein T28D6.9 protein.
          Length = 101

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/27 (37%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -2

Query: 460 RRQIRRYILAFLV-AIVGLVIIGGWYV 383
           RRQIR+Y++A +V +I  ++++  W +
Sbjct: 50  RRQIRKYVIASIVGSIFWIIVLSAWEI 76


>Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical
           protein F53F1.11 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 152 HTQITLALTTNILIDPFLKSSV*VYYS 72
           HTQ+  ALTT  +I  FL  +V +Y+S
Sbjct: 230 HTQLLRALTTQAIIPMFLGIAVLLYFS 256


>U10401-8|AAA19055.1|  340|Caenorhabditis elegans Tata-binding
           protein protein 1 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 499 FNTFVPRLLPGLGRRQIRRYILAFLVAIVGLVIIGG 392
           F+T+ P L PGL  R ++  ++  L+ + G V+I G
Sbjct: 283 FSTYEPELFPGLIYRMVKPRVV-LLIFVSGKVVITG 317


>L07754-1|AAA03582.1|  340|Caenorhabditis elegans TATA-box binding
           protein protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 499 FNTFVPRLLPGLGRRQIRRYILAFLVAIVGLVIIGG 392
           F+T+ P L PGL  R ++  ++  L+ + G V+I G
Sbjct: 283 FSTYEPELFPGLIYRMVKPRVV-LLIFVSGKVVITG 317


>AF303249-1|AAG50207.1|  340|Caenorhabditis elegans transcription
           factor TFIID protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 499 FNTFVPRLLPGLGRRQIRRYILAFLVAIVGLVIIGG 392
           F+T+ P L PGL  R ++  ++  L+ + G V+I G
Sbjct: 283 FSTYEPELFPGLIYRMVKPRVV-LLIFVSGKVVITG 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,871,235
Number of Sequences: 27780
Number of extensions: 281256
Number of successful extensions: 804
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)