Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g04f
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    28   0.088
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   2.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.4  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   5.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 0.088
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 557 SRSKHCHHDADELIIGGTDAGVNEYPHM 640
           S + +C       I+GGT+ G+NE+P M
Sbjct: 148 STNCNCGWKNPSRIVGGTNTGINEFPMM 175


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 203 VCTNIRKCQSALNDIRNRKS 262
           +C   ++  S+LN +RN KS
Sbjct: 34  ICNICKRVYSSLNSLRNHKS 53


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 99  KEFSVSLLFAHY 64
           KE+ VS++F+HY
Sbjct: 234 KEYLVSIMFSHY 245


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +1

Query: 412 QQWRQEMRGCTGGSDVSQDRAEGVGQMY 495
           + WR    G     DV    +EG+G  Y
Sbjct: 20  EAWRLVADGILNAKDVDAVMSEGLGMRY 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,560
Number of Sequences: 438
Number of extensions: 3563
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)