Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g01f
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    84   1e-17
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    28   0.93 
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    27   1.6  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    26   5.0  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    26   5.0  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    26   5.0  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   6.6  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   8.7  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   8.7  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   8.7  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    25   8.7  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    25   8.7  

>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 84.2 bits (199), Expect = 1e-17
 Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 2/156 (1%)
 Frame = +3

Query: 153 MTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAK 332
           M++ + L KAI LV  A + D  + Y +A + Y+  ++YF+ A+KYE + E++KE IR+K
Sbjct: 1   MSNPDCLSKAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYE-KNEKSKEIIRSK 59

Query: 333 CLQYLDRA--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGKLEGAI 506
            ++YLDRA                                           L+  L  AI
Sbjct: 60  VIEYLDRAEKLKVYLQEKNNQISSKSRVSNGNVEGSNSPTANEALDSDAKKLRSALTSAI 119

Query: 507 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
           +VEKP+V+W D+AG           V+LPIK P LF
Sbjct: 120 LVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLF 155


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 519 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
           P V W D+ G           + LP++FP LF
Sbjct: 650 PKVNWDDIGGLEEAKTVLRDTLQLPLQFPELF 681


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 507 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
           VVE P+V+W D+ G           V +P+ +   F
Sbjct: 488 VVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKF 523


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 207 EEDKNKNYEEALR--LYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLD 350
           E+  N   E+ L+  +Y      F   VK+ A  + +  S++  C QYLD
Sbjct: 102 EQYNNPVAEKLLKDAIYNCNTPLFEKNVKWLATFDHSSPSVQQSCFQYLD 151


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 80  YYYKKTRQI*IYVPTNSI 27
           YY+K+ RQI  Y PT+S+
Sbjct: 480 YYHKRHRQISPYYPTSSV 497


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 153 MTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQ 299
           +TSS  + KAI L TK+ +  K  N    L    + +E     +K E +
Sbjct: 360 ITSSTKITKAIGLNTKSNDSSKKDNTSFQLHQVLNSIEIPKVEIKQEVE 408


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 198 KATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESI 323
           K  +E K+K+ ++  +LYE    +   + +YE   E  KE +
Sbjct: 164 KKLQEKKDKSLKDEKKLYEAETAFEQSSQEYEYYNEMLKEEL 205


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 447 HYHSSYHHFWIPHPLLVFSFDLF*DIPLIFQLYQDIEG-ILHECFLLPFHL 298
           +++  +  +W  + +  F F L   IP++F L+  I G  LH    +  HL
Sbjct: 302 YWNVGFLRYWTLNNIPNFLFALLSIIPILFALFYSISGSTLHSFRSIKSHL 352


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 372 IPLIFQLYQDIEGILHEC 319
           IP    LY D+ GILH C
Sbjct: 26  IPEFDNLYLDMNGILHNC 43


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +3

Query: 504 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
           IVV    V W D++G           V+ P   P LF
Sbjct: 449 IVVSGDEVHWDDISGLEFAKHSLKEAVVYPFLRPDLF 485


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 366 LIFQLYQDIEGILHECFLLPFHL 298
           L+FQ YQ I  + ++CF    HL
Sbjct: 497 LLFQFYQSIMDLNNDCFTNTSHL 519


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +3

Query: 504 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
           I+     V WSD+AG           VI P   P LF
Sbjct: 369 IISNHEPVYWSDIAGLDDAKNSLKEAVIYPFLRPELF 405


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 122 CTIIVVNLKNNDIIKYLTKSY 184
           CT++ V+ KN+++I+ L  SY
Sbjct: 227 CTVLYVSAKNHNLIEALPLSY 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,088
Number of Sequences: 5004
Number of extensions: 32815
Number of successful extensions: 109
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)