Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12g01f
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0268 - 2214923-2215048,2215131-2215286,2215371-2215469,221... 75 3e-14
02_01_0450 + 3234378-3234834,3235118-3235223,3235722-3235920,323... 68 7e-12
01_01_0270 - 2225250-2225263,2225549-2225732,2225817-2225972,222... 52 5e-07
01_06_0280 + 28129750-28129868,28130677-28131145,28133605-281338... 31 0.73
06_01_0209 + 1587656-1587876,1587964-1588055,1590520-1590545,159... 31 0.96
04_01_0600 + 7907142-7908047,7908218-7908316 31 0.96
05_03_0414 + 13650483-13651388,13651559-13651657 30 1.3
04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990... 30 1.7
01_06_0763 + 31800556-31800618,31800659-31800802,31800859-318009... 30 1.7
01_06_0221 - 27653591-27653724,27654270-27654473,27655216-276553... 30 1.7
12_01_0668 - 5682664-5682916,5684542-5684576,5684643-5684693,568... 29 3.9
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 29 3.9
08_02_0657 - 19749835-19751942,19753123-19753561 28 5.1
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 28 6.8
12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837 27 8.9
08_01_0462 + 4072369-4072630,4072732-4072814,4072937-4073020,407... 27 8.9
01_06_0155 - 27057150-27057425 27 8.9
>01_01_0268 -
2214923-2215048,2215131-2215286,2215371-2215469,
2215557-2215631,2215732-2215800,2216515-2216713,
2220162-2220267,2221117-2221588
Length = 433
Score = 75.4 bits (177), Expect = 3e-14
Identities = 50/155 (32%), Positives = 68/155 (43%), Gaps = 4/155 (2%)
Frame = +3
Query: 162 SNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQ 341
SN ++AI+ V +A +ED NY +A LY + +EYF +KYE + + KE+I AK +
Sbjct: 3 SNFKEQAIEYVKQAVQEDNAGNYVKAFPLYMNALEYFKTHLKYE-KNPKIKEAITAKFTE 61
Query: 342 YLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGK----LEGAIV 509
YL RA Q K L AI+
Sbjct: 62 YLRRAEEIRAVLDEGGGGGGANGGDAAVATRPKTKGKDGEGGGDDSEQSKLRAGLNSAII 121
Query: 510 VEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
EKP++KW+DVAG VILP+KFP F
Sbjct: 122 TEKPNIKWNDVAGLESAKQALQEAVILPVKFPQFF 156
>02_01_0450 +
3234378-3234834,3235118-3235223,3235722-3235920,
3236119-3236187,3236299-3236373,3236484-3236582,
3236694-3236864,3237394-3237519
Length = 433
Score = 67.7 bits (158), Expect = 7e-12
Identities = 45/147 (30%), Positives = 63/147 (42%)
Frame = +3
Query: 174 QKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLDR 353
++ I LV KA EED N+ AL LY H ++Y +KYE + R +++I AK Y+ R
Sbjct: 7 EQGILLVRKAVEEDDAGNHARALPLYVHALDYLAAHLKYE-RNPRVRDAITAKLAGYIAR 65
Query: 354 AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGKLEGAIVVEKPHVKW 533
A L+ L AIV EKP+V+W
Sbjct: 66 A-EEIRDALLPAAGDDATPPAAAAEEGKAKCGGGEDESDRAKLRAGLHSAIVSEKPNVRW 124
Query: 534 SDVAGXXXXXXXXXXXVILPIKFPHLF 614
SDV+G V+LP++FP F
Sbjct: 125 SDVSGLDGAKQALQEAVVLPVEFPQFF 151
>01_01_0270 -
2225250-2225263,2225549-2225732,2225817-2225972,
2226276-2226374,2226489-2226563,2226682-2226750,
2226917-2227115,2227492-2227597,2228118-2228526
Length = 436
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = +3
Query: 162 SNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQ 341
SN ++AI+ V +A +ED NY +A LY + +EYF +KYE + + K++I AK +
Sbjct: 3 SNFKEQAIEYVKQAVQEDNGGNYVKAFPLYMNALEYFKTHLKYE-KDPKIKDAIAAKFTE 61
Query: 342 YLDRA 356
YL RA
Sbjct: 62 YLRRA 66
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/44 (54%), Positives = 25/44 (56%)
Frame = +3
Query: 483 QGKLEGAIVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
+G L AIV KP VKWSDVAG ILPIKFPH F
Sbjct: 92 RGMLRSAIVAAKPSVKWSDVAGLESAKEALQEAAILPIKFPHFF 135
>01_06_0280 +
28129750-28129868,28130677-28131145,28133605-28133802,
28134168-28134412,28134749-28134907,28135491-28135578,
28135983-28136264
Length = 519
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 480 LQGKLEGAIVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
L LE ++ P V+W DVAG V+LP+ P F
Sbjct: 217 LAAMLERDVLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYF 261
>06_01_0209 +
1587656-1587876,1587964-1588055,1590520-1590545,
1591130-1591370,1591459-1591554,1591639-1591754,
1591837-1591917,1592597-1592720,1593222-1593271,
1593735-1593825,1594386-1594421,1594502-1594602,
1594684-1594800
Length = 463
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = +3
Query: 504 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
IV P VKW DVAG VILP K LF
Sbjct: 181 IVDRSPAVKWEDVAGLDKAKQALMEMVILPTKRRDLF 217
>04_01_0600 + 7907142-7908047,7908218-7908316
Length = 334
Score = 30.7 bits (66), Expect = 0.96
Identities = 29/112 (25%), Positives = 49/112 (43%)
Frame = +3
Query: 21 EFY*ISRYINSYLPCFLIIIAANNCVKDTAEQFFAP*LW*I*KTMTSSNTLQKAIDLVTK 200
+F R I ++ +L+ + + + D ++ W + + + L K +DL TK
Sbjct: 109 DFSSTKRNIIGHVSGWLMSDSREDKIDDFVQEMEMTRFWPLERREVIAEVLLKNVDLKTK 168
Query: 201 ATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLDRA 356
+K +N E RL +H + V G RAK S+R C+Q D A
Sbjct: 169 YHCPEKYENEE---RLADHKAQCSFRPVTCPNDGCRAKVSVR--CMQDHDSA 215
>05_03_0414 + 13650483-13651388,13651559-13651657
Length = 334
Score = 30.3 bits (65), Expect = 1.3
Identities = 29/112 (25%), Positives = 49/112 (43%)
Frame = +3
Query: 21 EFY*ISRYINSYLPCFLIIIAANNCVKDTAEQFFAP*LW*I*KTMTSSNTLQKAIDLVTK 200
+F R I ++ +L+ + + + D ++ W + + + L K +DL TK
Sbjct: 109 DFSSTKRNIIGHVSGWLMSDSREDKIDDFVQEMEMTRFWPLERREIIAEVLLKNVDLKTK 168
Query: 201 ATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLDRA 356
+K +N E RL +H + V G RAK S+R C+Q D A
Sbjct: 169 YHCPEKYENEE---RLADHKAQCSFRPVTCPNDGCRAKVSVR--CMQDHDSA 215
>04_04_1163 -
31398565-31398654,31398729-31398812,31398893-31399037,
31399118-31399239,31399338-31399376,31399491-31399601,
31399682-31399804,31399946-31400032,31400136-31400207,
31400349-31400621,31400704-31400895,31400988-31401171,
31401339-31401480,31401578-31401821,31401959-31402603,
31403024-31403293
Length = 940
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 519 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
P+VKW DV G + LP+ + HLF
Sbjct: 652 PNVKWEDVGGLEEVKKVILDTIQLPLLYKHLF 683
>01_06_0763 +
31800556-31800618,31800659-31800802,31800859-31800980,
31801742-31801807,31801891-31801998,31802226-31802292,
31802716-31802800,31803169-31803329,31803490-31803591,
31803807-31804029,31804155-31804300
Length = 428
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 504 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
I+ P VKW + G V++PIK+P F
Sbjct: 134 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF 170
>01_06_0221 -
27653591-27653724,27654270-27654473,27655216-27655315,
27655728-27655888,27656846-27656930,27657548-27657614,
27658434-27658541,27658639-27658704,27659341-27659387,
27659497-27659691,27659833-27659877
Length = 403
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 504 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
I+ P VKW + G V++PIK+P F
Sbjct: 120 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF 156
>12_01_0668 -
5682664-5682916,5684542-5684576,5684643-5684693,
5685362-5685505,5685981-5686265,5686369-5686441,
5687123-5687343,5687447-5687524,5687626-5687688,
5688700-5688900
Length = 467
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 158 CHCFLNSPQLWCKKLLSCIFDAIIRCYY 75
CHC+++ ++ K LSC+ + CYY
Sbjct: 400 CHCYISQQEI---KRLSCMAKCALACYY 424
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 165 NTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESI 323
N + K I+L E++ K EEA R Y+ E HA + A GE+ ++
Sbjct: 605 NLVNKEIELYNTMLEKEGTKGEEEARRAYKAAREESDHAAEI-AAGEKVSSAL 656
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 507 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
+VE P V W D+ G V P++ P +F
Sbjct: 480 IVEVPKVSWDDIGGLGEVKRELQETVQYPVEHPEMF 515
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 507 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
VVE P+V W D+ G V P++ P F
Sbjct: 474 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKF 509
>12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837
Length = 364
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +3
Query: 96 VKDTAEQFFAP*LW*I*KTMTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFL 275
+ D ++ W + + + L K +DL TK +K YE RL +H +
Sbjct: 163 IDDFVQEMEMTRFWPLERREAIAEVLLKNVDLKTKYHCPEK---YENEQRLADHKAQCSF 219
Query: 276 HAVKYEAQGERAKESIR 326
V G RAK S+R
Sbjct: 220 RPVTCPNDGCRAKVSVR 236
>08_01_0462 +
4072369-4072630,4072732-4072814,4072937-4073020,
4073509-4073584,4073712-4073784,4073878-4073951,
4074158-4074251,4074374-4074443
Length = 271
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 189 LVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYE 293
+V +ATE N +EE Y HG + L A YE
Sbjct: 125 VVAEATECTNNDYFEEVYEYYAHGDAWRLPAGAYE 159
>01_06_0155 - 27057150-27057425
Length = 91
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +3
Query: 156 TSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIR 326
+SS+ ++++ ++ ++++ NK +EEAL Y G H V G + + +R
Sbjct: 6 SSSSRNSNSVNMDSEWSKKE-NKLFEEALAYYGEGAPDLFHKVSRAMGGTKTADEVR 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,771,852
Number of Sequences: 37544
Number of extensions: 178525
Number of successful extensions: 483
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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