Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12g01f
(616 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 116 2e-26
Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 28 4.6
Z82077-5|CAB63333.1| 783|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF039053-2|AAC25877.3| 294|Caenorhabditis elegans Serpentine re... 28 6.1
Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z35663-14|CAA84733.1| 805|Caenorhabditis elegans Hypothetical p... 27 8.1
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 116 bits (278), Expect = 2e-26
Identities = 65/148 (43%), Positives = 81/148 (54%)
Frame = +3
Query: 171 LQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLD 350
LQKAI+LVTKATEED Y++ALRLY+ +EYFLHA+KYE+QG++ + +IR K QYL+
Sbjct: 6 LQKAIELVTKATEEDTAGRYDQALRLYDQAIEYFLHAIKYESQGDKQRNAIRDKVGQYLN 65
Query: 351 RAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGKLEGAIVVEKPHVK 530
RA Q KL GAIV+EKP+VK
Sbjct: 66 RA---------EQIKTHLKDGKTQKKPVKDGKDDSDEDEDKKKFQDKLSGAIVMEKPNVK 116
Query: 531 WSDVAGXXXXXXXXXXXVILPIKFPHLF 614
W+D+AG VILPIKFP LF
Sbjct: 117 WTDIAGLEGAKEALKEAVILPIKFPQLF 144
>Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical
protein K04G2.3 protein.
Length = 724
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 507 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
++E P+V W+D+ G VI P K P F
Sbjct: 450 ILEVPNVSWNDIGGNEELKLEIQQAVIWPQKHPEAF 485
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 492 LEGAIVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 614
+E I+ + W+DVAG V+LP K P +F
Sbjct: 302 IESEIMSVNNEIGWADVAGLEGAKKALREIVVLPFKRPDVF 342
>Z82077-5|CAB63333.1| 783|Caenorhabditis elegans Hypothetical
protein W09C5.7 protein.
Length = 783
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 150 TMTSSNTLQKAIDLVTKATEEDKNKNYEE 236
T T QKAI++VT TE D+N EE
Sbjct: 503 THTKDAQRQKAINIVTGQTEADENAEEEE 531
>AF039053-2|AAC25877.3| 294|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 20 protein.
Length = 294
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 450 CHYHSSYHHFWIPHPLLVFSFDLF*DIPLIFQLY 349
C ++ YH +WI H + VF+ I L +L+
Sbjct: 160 CTINACYHQYWITHRMTVFALMFLFSIFLASKLF 193
>Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Frame = +3
Query: 186 DLVTKATEEDKNKNYEEALRLYEHGV--------EYFLHAVKYEAQGE-RAKESIRAKCL 338
D++ +A + YEEA+ L++H + YF A Y+ +GE A E+ R K +
Sbjct: 453 DILDRADNLVEKHQYEEAMELFDHVIAVYPASTRAYFGKARAYDIRGEIEADETDRDKAI 512
Query: 339 QYLDR 353
+ ++
Sbjct: 513 EIYEK 517
>Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Frame = +3
Query: 186 DLVTKATEEDKNKNYEEALRLYEHGV--------EYFLHAVKYEAQGE-RAKESIRAKCL 338
D++ +A + YEEA+ L++H + YF A Y+ +GE A E+ R K +
Sbjct: 453 DILDRADNLVEKHQYEEAMELFDHVIAVYPASTRAYFGKARAYDIRGEIEADETDRDKAI 512
Query: 339 QYLDR 353
+ ++
Sbjct: 513 EIYEK 517
>Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical
protein W05E10.1 protein.
Length = 484
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 326 TNAFFCPFTLGLIFYCMKKILYTVL 252
T +F P GL+F C+ ILY +L
Sbjct: 96 TESFKVPVATGLVFCCVGNILYGIL 120
>Z35663-14|CAA84733.1| 805|Caenorhabditis elegans Hypothetical
protein T04A8.16 protein.
Length = 805
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 174 QKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVK 287
Q A +L KA D+ K YEEA+ Y L V+
Sbjct: 7 QSAFELSQKAVYYDQGKKYEEAIFCYTEAGNQLLRLVQ 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,980,689
Number of Sequences: 27780
Number of extensions: 181033
Number of successful extensions: 521
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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