Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g01f
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   5.5  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   7.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.6  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 315 LLPFHLGPHILLHEENTLHRAHINVMLLHSS 223
           L P H    ++ H   TL   ++ ++L HSS
Sbjct: 101 LPPLHPHTAMVTHLPQTLTSENVEILLEHSS 131


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 76  IIRKQGKYEFMYLLIQ*NSIKFVVS 2
           + + QG    M LLI  NS+K +VS
Sbjct: 78  VFKPQGIKAVMELLIDENSVKQLVS 102


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 198 KATEEDKNKNYEEALRLYE 254
           ++  +D+N+ Y+E  R YE
Sbjct: 2   RSCSKDRNREYKEKDRRYE 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,917
Number of Sequences: 438
Number of extensions: 2579
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)