Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f24f
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz...    27   1.6  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   2.2  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    25   5.0  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   6.7  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   8.8  

>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -1

Query: 252 PMSTKVGISFHKGANR-LNGERFSHGN--VNWSSV 157
           PM+TK+G  ++KG      G++  HG   V WS V
Sbjct: 14  PMTTKLGHQYYKGTRTGKMGQKTRHGGFLVQWSRV 48


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 143  QPVSITDDQFTFPWLNLSPFSLFAPL-WKLIPTF 241
            +P +ITDD    P  N     L +PL W +I ++
Sbjct: 1058 EPYAITDDNDYLPMANTGSLDLVSPLTWTVIDSY 1091


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 414 KNWLANTSWSSSLASCDPWTKIKS 343
           + W+ N+S S  L  CD   KI+S
Sbjct: 187 EKWMKNSSISEYLQECDSMAKIES 210


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -1

Query: 258 LGPMSTKVGISFHKGANRLNGERFSHGNVNWSSVMETGCAITSLSRAGKAVTVAKPAKAM 79
           L P S  V +  +  A + NG+R   G+V++ S  +   +IT +      +TVA   + +
Sbjct: 254 LKPGSVVVDVGIN--AVQRNGKRVLVGDVHFESASKVASSITPVPGGVGPMTVAMLMENI 311

Query: 78  KTAKR--RGENIFLDI 37
             A +  R ENI+  I
Sbjct: 312 VNAAKIARTENIYRKI 327


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 247 VHKSGDQLPQRSKQTEWRKVQPWERELV 164
           +H+S D + +R   + W +V P  ++LV
Sbjct: 252 LHRSFDVIVRRQLDSVWHRVSPKTKQLV 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,694,250
Number of Sequences: 5004
Number of extensions: 27424
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)