Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f24f
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    29   2.9  
01_01_0092 + 722744-723459,723542-723711,723792-724885                 29   2.9  
06_03_0683 - 23490215-23490997                                         28   5.1  
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506...    27   6.7  
01_01_0826 + 6431621-6431917,6432356-6432505,6432614-6432796,643...    27   6.7  
05_03_0070 - 8023343-8023528,8023606-8023639,8024013-8024058,802...    27   8.8  
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133...    27   8.8  
01_01_1154 - 9178427-9178738,9179819-9180874                           27   8.8  

>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 172  HVPMAEPFAI-QSVCSFVEADPHFCGHRAKN 261
            HVPM EP  I  S C  V AD    G   KN
Sbjct: 1336 HVPMQEPLRIASSCCEIVNADQVCAGEVGKN 1366


>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 149 VSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIY 265
           +S  + +F     NL   S   PLW  +P F D+G ++Y
Sbjct: 92  ISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLY 130


>06_03_0683 - 23490215-23490997
          Length = 260

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -1

Query: 156 METGCAITSLSRAGKAVTVAKPAKAMKTAKRRGENIFLDIRVSNS 22
           ++TG   ++L++  + +T     K + +  +R E I++D+R+  S
Sbjct: 76  IKTGMPTSTLTKHLRGLTSKGVLKVVNSVHKRAEKIYMDVRIDPS 120


>04_04_0964 -
           29749624-29749649,29749742-29749945,29750036-29750634,
           29750742-29750826,29750914-29751562,29751568-29751643,
           29753891-29753957,29754097-29754998,29756579-29756790
          Length = 939

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 389 HDVFASQFFHTYSLPVNSSAADVTAELTSD 478
           HD F   + H  S+P+    A V AE++ D
Sbjct: 809 HDSFLRSYLHLTSMPLPCEGAAVPAEISKD 838


>01_01_0826 +
           6431621-6431917,6432356-6432505,6432614-6432796,
           6433305-6433385,6433548-6433586,6433646-6433849,
           6433933-6434073,6434270-6434437,6434498-6434518
          Length = 427

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 171 NWSSVMETGCAITSLSRAGKAVTVAKPAKAMKTAKRRGE-NIFLDIRVSNSS 19
           N S  ME    I  L RAG  VTVA     ++   RR + N+  DI V  ++
Sbjct: 257 NGSEEMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVEEAA 308


>05_03_0070 -
           8023343-8023528,8023606-8023639,8024013-8024058,
           8024139-8024389,8024473-8026001,8026128-8026496,
           8026582-8026821
          Length = 884

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -3

Query: 241 KSGDQLPQRSKQTEWRKVQPWERELVICNGDGLRDNFFVPGRQSRYRCETGESDENRKE 65
           K G+  P+RSKQ   +KV P + + V  N  G + +     R ++ +   GE   NRK+
Sbjct: 78  KEGEMAPRRSKQEPKKKV-PSKDDDVPANTTGTKKS----ERSAKAKKRKGERSVNRKD 131


>03_06_0352 -
           33312443-33312652,33312747-33312854,33313224-33313397,
           33313489-33313695,33313700-33313987,33314087-33314319,
           33314450-33315263
          Length = 677

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 480 PSEVSSAVTSAALEFTGRL*VWKNWLANTSWSSSLAS 370
           P E+   + SAA  F  R+ V K+W+ +T  SS++ +
Sbjct: 403 PVELFIGILSAANHFAERMAVRKSWMIDTRKSSNVVA 439


>01_01_1154 - 9178427-9178738,9179819-9180874
          Length = 455

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 138 ITSLSRAGKAVTVAKPAKAMKTAKRRGENIFLDIRVSNSSMQLELS 1
           +TSL  A    T ++PA A  +A R+   + LD R   S+  L+ S
Sbjct: 14  LTSLDLATSPATASRPAAAAASALRKRPVLLLDQRHHPSTPNLDSS 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,471,852
Number of Sequences: 37544
Number of extensions: 191972
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)