Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f24f
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   31   0.56 
SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06)                  29   1.7  
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)                    29   3.0  
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                      28   3.9  
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)                   28   5.2  
SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12)                    28   5.2  
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   9.1  
SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023)         27   9.1  
SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023)          27   9.1  
SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0)                27   9.1  

>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 350 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 499
           I + G  ++ E +H    S+F  +Y+LP     + V++ +T DG L + A
Sbjct: 64  IKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIEA 112


>SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06)
          Length = 371

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = -1

Query: 261 ILGPMSTKVGISFHKGANRLNGERFSHGNVNWSSVMETGCAITSLSRAGKAVTVAKPAKA 82
           I+GP+  K G  F     R  G  F     NW  V+ T    T +S A   + V +PA  
Sbjct: 217 IMGPLWFKHGDIFPVARLRFEGFMFDVPR-NWKQVLRTLYGRTGISAAVPTLMVVEPAPT 275

Query: 81  MK 76
            K
Sbjct: 276 QK 277


>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
          Length = 405

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -3

Query: 268 SVDSWPDVHKSGDQLPQRSKQTEWRKVQPWEREL--VICNGDGLRD 137
           +V S+  + KSG  +P R++ T +R   PW +E+  ++C  D L +
Sbjct: 135 AVSSYRFLCKSGHYIPLRTRSTLFR--NPWTKEIEFLVCTNDVLTE 178


>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 362 GSQEAKEDDHDVFASQFFHTYSLPVNSSAA 451
           G+   +E+D DV+A      Y +P N SAA
Sbjct: 245 GTGVFEEEDDDVYAQDIMSNYDIPKNISAA 274


>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
          Length = 444

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 140 AQPVSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGP 256
           + P + T DQ +  + + SPFS  APL    P FVD  P
Sbjct: 219 SSPETFTSDQLSPTYSSPSPFSSKAPL----PVFVDFTP 253


>SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12)
          Length = 275

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 261 ILGPMSTKVGISFHKGANRLNGERFSH 181
           + G   T+VGI  H G NR+  + F H
Sbjct: 209 VAGEKKTEVGIKIHSGRNRIVRKIFEH 235


>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1041

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -3

Query: 178  ERELVICNGDGLRDNFFVPGRQSRYRCETGESDENRKETR*EHFLGYT---CFKLEYAIR 8
            E +   C  DGL+ +  V  ++  Y+C       N K    +H   +T    FK EY  R
Sbjct: 852  ECQRAFCRADGLQCHMLVHNKKKMYKCNFCGKGFNDKIVLEKHIYSHTGVKPFKCEYCGR 911


>SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023)
          Length = 186

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 165 SSVMETGCAITSLSRAGKAVTVAKPAKAMKTAKRRG 58
           S  ++TG A+       K V VAKPA+    AKR+G
Sbjct: 73  SRAVKTG-ALVKNGAYFKVVVVAKPARKRSAAKRKG 107


>SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023)
          Length = 186

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 165 SSVMETGCAITSLSRAGKAVTVAKPAKAMKTAKRRG 58
           S  ++TG A+       K V VAKPA+    AKR+G
Sbjct: 73  SRAVKTG-ALVKNGAYFKVVVVAKPARKRSAAKRKG 107


>SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 1091

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +2

Query: 23  EFETRISKKMFSPRLFAVFIAFAGFATVTALPARDKEVIAQPVSITDDQFTFPWLNLSPF 202
           +F+ R+    F  RLF V    + FA VT +  +  + I+ P  I  +QF   W+   P 
Sbjct: 685 DFDQRLLST-FVNRLFTVSSFESDFALVTDVDGKKGKNISMPEGIRREQFV-QWVEHLP- 741

Query: 203 SLFAPLWKLIP 235
               P W  +P
Sbjct: 742 DAQTPSWLGLP 752


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,021,115
Number of Sequences: 59808
Number of extensions: 215761
Number of successful extensions: 622
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)