Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f21r
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82085-3|CAB04985.1|  180|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81124-8|CAD56599.1|  426|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z82085-3|CAB04985.1|  180|Caenorhabditis elegans Hypothetical
           protein ZK218.4 protein.
          Length = 180

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
 Frame = -3

Query: 362 SEQSAIENTVIKLK-YTIFLFLFVFLFARCI*FYLEQNAVRRCHGDSTSN-IIAIIYILF 189
           S +SA  N  +  +  T+F  LF+F+ A+ + FYL  + V     DS  N ++ +I+  +
Sbjct: 34  SRESAEPNRFLTQRSLTVFYLLFIFVTAKELGFYLWISIVSE---DSDKNKLLQVIFYYY 90

Query: 188 FSYNLPSKM*FLFKNFLYLWNN*S-NEISRVT 96
            SY     + F+   F +L  + S ++++R T
Sbjct: 91  TSYIFLQIILFIGMIFQFLMKSESQDQLTRQT 122


>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical
           protein F29D11.2 protein.
          Length = 1153

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -3

Query: 236 HGDSTSNIIAIIYILFFSYNLPSKM*FLFKNFLYLWNN*SNEISRVT---FVSYVF 78
           H      +IA+      ++ LPS +     NF+  W +  N  +R+    F+SY+F
Sbjct: 152 HRARVFKLIAVTITEIQAFKLPSDLLDFIINFINTWGHSDNVAARINTTCFISYIF 207


>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical
           protein F29D11.2 protein.
          Length = 1153

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -3

Query: 236 HGDSTSNIIAIIYILFFSYNLPSKM*FLFKNFLYLWNN*SNEISRVT---FVSYVF 78
           H      +IA+      ++ LPS +     NF+  W +  N  +R+    F+SY+F
Sbjct: 152 HRARVFKLIAVTITEIQAFKLPSDLLDFIINFINTWGHSDNVAARINTTCFISYIF 207


>Z81124-8|CAD56599.1|  426|Caenorhabditis elegans Hypothetical
           protein T21B4.14 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 58  YFINYTIKTYDTNVTREISFD*LFHKYRKFLNKNYIFDGK-L*EKNNIYIMAMIL-LVLS 231
           YF N+T   ++T+     S   L++ Y  F N N   D + L  K+ + +   I+ LV  
Sbjct: 62  YFRNHTTFQFNTSHYFMQSSSPLYNYYLTFYNTNCSLDDRFLVSKSGLALTCNIIGLVAL 121

Query: 232 PWQRLTAFC 258
           P Q  T +C
Sbjct: 122 PIQIFTGYC 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,215,644
Number of Sequences: 27780
Number of extensions: 274427
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)