Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f21r
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.7  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.9  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   2.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.8  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   6.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   6.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +1

Query: 61  FINYTIKTYDTNVTREISFD*LFHKYRKFLNKNYIFDGKL*EKNNIYIMAMILLVL 228
           F+NY  +   T  +  +  + +F    KFL + Y+ + KL +     I+ M+++ L
Sbjct: 318 FLNYLKRGGKTLTSISVESNTMFINILKFLKQKYVKNSKLEKVIKHDILRMLIIDL 373


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 616 CIEKKKRTKHYSSRFVDIEKSRAKHYISY 702
           C+ ++KR +   +R+  +E  +  HY  Y
Sbjct: 4   CVPERKRGRQTYTRYQTLELEKEFHYNRY 32


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 286 NKNTNKNKKIVYFNFITVFSI 348
           N N N N K +Y+N I +  I
Sbjct: 313 NYNNNYNSKKLYYNIINIEQI 333


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 286 NKNTNKNKKIVYFNFITVFSI 348
           N N N N K +Y+N I +  I
Sbjct: 324 NYNNNYNSKKLYYNIINIEQI 344


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 286 NKNTNKNKKIVYFNFITVFSI 348
           N N N N K +Y+N I +  I
Sbjct: 344 NNNYNNNCKKLYYNIINIEQI 364


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 10  KDKTIFNKIVH*LRXSYFINYTIKTYDT 93
           KDKTI   +   L+ S  +N+ I  +DT
Sbjct: 147 KDKTILYMVKLTLKLSCAMNFLIYPHDT 174


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +1

Query: 274 IQRANKNTNKNKKIVY-FNFI 333
           I   N N N NKK+ Y  N+I
Sbjct: 93  ISNYNNNNNYNKKLYYNINYI 113


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 292 NTNKNKKIVYFNFI 333
           N N NKK+ Y N+I
Sbjct: 108 NNNYNKKLYYKNYI 121


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +1

Query: 274 IQRANKNTNKNKKIVY-FNFI 333
           I   N N N NKK+ Y  N+I
Sbjct: 331 ISNYNNNNNYNKKLYYNINYI 351


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 351 CNRKYSNKIKIHNFFIFVCIFVCTLYLVLFR 259
           CN        I   +  + I VCT+Y VL R
Sbjct: 808 CNSYVDASYMIAFAYPIMLIVVCTVYAVLTR 838


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,178
Number of Sequences: 438
Number of extensions: 3567
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)