Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f21f
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 159 2e-40
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 89 4e-19
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 60 3e-10
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 60 3e-10
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 59 5e-10
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 59 6e-10
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 56 3e-09
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 56 4e-09
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 55 7e-09
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 54 1e-08
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 52 7e-08
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 51 1e-07
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 51 2e-07
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 51 2e-07
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 49 6e-07
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 44 2e-05
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 44 2e-05
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.43
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 28 1.3
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 2.3
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 27 3.0
SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha... 27 3.0
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 26 4.0
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 26 4.0
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 26 5.2
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 6.9
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 25 9.1
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.1
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 25 9.1
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 159 bits (387), Expect = 2e-40
Identities = 77/117 (65%), Positives = 91/117 (77%)
Frame = +1
Query: 223 SRKMTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 402
S + EYKL KSALTIQLIQ+HFVDEYDPTIEDSYRK+ IDGE LLD+LD
Sbjct: 3 STYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLD 62
Query: 403 TAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGSYREQIKRVKDAEEVPMVLV 573
TAGQEEYSAMR+QYMRTGEGFLLV+ + S SF++I ++ +QI RVKD + P+VLV
Sbjct: 63 TAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLV 119
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 89.4 bits (212), Expect = 4e-19
Identities = 40/103 (38%), Positives = 67/103 (65%)
Frame = +1
Query: 277 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 456
KS+LT+Q ++NHFV+ Y PTIE+++ K + G+ +I+DTAGQ+EYS + ++
Sbjct: 19 KSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEYSILNSKHSIGI 78
Query: 457 EGFLLVFAVNSAKSFEDIGSYREQIKRVKDAEEVPMVLVGTSA 585
G++LV+++ S SFE + R++I E VP+V+VG +
Sbjct: 79 HGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKS 121
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 59.7 bits (138), Expect = 3e-10
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Frame = +1
Query: 277 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 453
K+++ Q + F +Y TI D K+V++D + L + DTAGQE + ++ + R
Sbjct: 21 KTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRG 80
Query: 454 GEGFLLVFAVNSAKSFEDIGSYREQI---KRVKDAEEVPMVLVG 576
+ +LV+ VN++KSFE + S+R++ + E P +L+G
Sbjct: 81 ADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLG 124
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 59.7 bits (138), Expect = 3e-10
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Frame = +1
Query: 277 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 456
K++L +F EY PT+ ++Y +DG++ L + DTAGQEEY +R
Sbjct: 21 KTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERLRPMSYAKA 80
Query: 457 EGFLLVFAVNSAKSFEDIGS-YREQIKRVKDAEEVPMVLVGTSATYSRGP*TWREHER 627
L+ FA++S S E++ + + E+I + VP +LVG A P E R
Sbjct: 81 HIILVGFAIDSPDSLENVSTKWIEEINTL--CPNVPFILVGMKADLRSDPVAIEEMRR 136
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 59.3 bits (137), Expect = 5e-10
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Frame = +1
Query: 277 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 453
K+ L Q + F EY TI D K VV+D + L + DTAGQE + ++ + R
Sbjct: 21 KTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRG 80
Query: 454 GEGFLLVFAVNSAKSFEDIGSYREQI--KRVKDAEEVPMVLVG 576
+ ++V+ VN++KSF+ + ++R++ + +D P ++VG
Sbjct: 81 ADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVG 123
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 58.8 bits (136), Expect = 6e-10
Identities = 30/78 (38%), Positives = 43/78 (55%)
Frame = +1
Query: 277 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 456
K+ L I N F +Y PT+ D+Y V+I E L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 457 EGFLLVFAVNSAKSFEDI 510
+ FL+ F+V S SFE++
Sbjct: 76 DVFLVCFSVTSPASFENV 93
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 56.4 bits (130), Expect = 3e-09
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Frame = +1
Query: 277 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 453
KS L ++ +N F E TI + + +V+D + I DTAGQE Y A+ Y R
Sbjct: 23 KSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRG 82
Query: 454 GEGFLLVFAVNSAKSFEDIGSYREQIKRVKDAEEVPMVLVG 576
G L+V+ + SF+++G + ++++ D+ + ++LVG
Sbjct: 83 AVGALIVYDITKQSSFDNVGRWLKELREHADS-NIVIMLVG 122
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 56.0 bits (129), Expect = 4e-09
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Frame = +1
Query: 241 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 417
+KL KS L ++ + + + Y TI ++ + ++G+T L I DTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 68
Query: 418 EYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGSYREQIKRVKDAEEVPMVLVGTSA 585
+ + Y R G ++V+ V SF ++ + ++I R E V +LVG +
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYA-VEGVNRLLVGNKS 123
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 55.2 bits (127), Expect = 7e-09
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Frame = +1
Query: 220 ISRKMTEY--KLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLL 390
+S K +Y KL KS L ++ ++ F + TI ++ + + +DG+ L
Sbjct: 1 MSTKSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKL 60
Query: 391 DILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGSYREQIKRVKDAEEVPMVL 570
I DTAGQE + + Y R G LL++ V KSF+++ ++ +++ +E V +L
Sbjct: 61 QIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQ-HASENVYKIL 119
Query: 571 VG 576
+G
Sbjct: 120 IG 121
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 54.4 bits (125), Expect = 1e-08
Identities = 26/78 (33%), Positives = 43/78 (55%)
Frame = +1
Query: 277 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 456
K++L + +F Y+PTI ++Y + +DG + L + DTAGQEEY +R
Sbjct: 26 KTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQLRSLSYSDT 85
Query: 457 EGFLLVFAVNSAKSFEDI 510
++ FAV+S S E++
Sbjct: 86 HVIMICFAVDSRDSLENV 103
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 52.0 bits (119), Expect = 7e-08
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Frame = +1
Query: 277 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCL-LDILDTAGQEEYSAMRDQYMR 450
KS+L ++ +++ F D + TI ++ Q + ID T + L+I DTAGQE Y ++ Y R
Sbjct: 27 KSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYR 86
Query: 451 TGEGFLLVFAVNSAKSFEDIGSYREQIKRVKDAEEVPMVLVG 576
++V+ + A S E S+ ++++R + E + + L G
Sbjct: 87 NANCAIVVYDITQAASLEKAKSWIKELQR-QAPEGIVIALAG 127
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 51.2 bits (117), Expect = 1e-07
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Frame = +1
Query: 223 SRKMTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDIL 399
S + ++KL K++L + + + F + Y TI D K + ++ T L +
Sbjct: 6 SFSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 65
Query: 400 DTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGSYREQIKRVKDAEEVPMVLVG 576
DTAGQE + ++ Y+R ++V+ + + SF + + E + R + ++V +VLVG
Sbjct: 66 DTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDV-RAERGDDVIIVLVG 123
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 50.8 bits (116), Expect = 2e-07
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Frame = +1
Query: 277 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 456
K+ L I + F + Y PT+ ++Y V +DG L + DTAGQE+Y +R
Sbjct: 19 KTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDYDRLRPLSYPDS 78
Query: 457 EGFLLVFAVNSAKSFEDIGSYREQIKRVKD-AEEVPMVLVGTSATYSRGP 603
L+ FAV+S S +++ + I V +P++LV A P
Sbjct: 79 HVILICFAVDSPDSLDNV--QEKWISEVLHFCSSLPILLVACKADLRNDP 126
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 50.8 bits (116), Expect = 2e-07
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = +1
Query: 277 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 456
K+ L I + F + Y PT+ ++Y V +DG L + DTAGQE+Y +R
Sbjct: 19 KTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDS 78
Query: 457 EGFLLVFAVNSAKSFEDIGSYREQIKRVKD-AEEVPMVLVGTSATYSRGP*TWRE 618
L+ F+V++ +S +++ + I V +P++LVG P T E
Sbjct: 79 HVVLICFSVDAPESLDNV--QEKWISEVLHFCSNLPILLVGCKVDLRNDPKTIEE 131
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 48.8 bits (111), Expect = 6e-07
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Frame = +1
Query: 277 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-----ETCLLDILDTAGQEEYSAMRDQ 441
KS L + ++N + D+ T+ + +++ G + L I DTAGQE++ ++
Sbjct: 22 KSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARN 81
Query: 442 YMRTGEGFLLVFAVNSAKSFEDIGSYREQIKRVKDAEEVPMVLVGTSA 585
Y R G +LV+ V + SFE++ S+ I R + +VL G+ +
Sbjct: 82 YYRGAAGAVLVYDVTNKDSFEELSSWLSDI-RAMAPSTICVVLAGSKS 128
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/68 (33%), Positives = 40/68 (58%)
Frame = +1
Query: 373 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGSYREQIKRVKDAE 552
GE C ++ DTAGQE+ +RD Y G+ +++F V S +++++ + + RV E
Sbjct: 56 GEICF-NVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRV--CE 112
Query: 553 EVPMVLVG 576
+P+VL G
Sbjct: 113 NIPIVLCG 120
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 44.0 bits (99), Expect = 2e-05
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Frame = +1
Query: 223 SRKMTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDIL- 399
S+ T KL K+ L I F + Y PT+ ++Y + + ++++
Sbjct: 9 SKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELAL 68
Query: 400 -DTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDI-GSYREQIKRVKDAEEVPMVLV 573
DTAGQEEY +R LL F+++ S ++ + +++ P+VLV
Sbjct: 69 WDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHF--CPRTPIVLV 126
Query: 574 GTSA 585
G A
Sbjct: 127 GLKA 130
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.5 bits (63), Expect = 0.43
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = -1
Query: 569 STMGTSSASFTRLICSRYEPMSSKLLALLTANTSKNPSPVRM-YWSLIAEYSSWPAVSRM 393
+T SS+S T + SS LA + N++ + SP S A SS + S
Sbjct: 66 NTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTT 125
Query: 392 SSKHVSPSITTCLRYESSIVGS 327
SS S SIT+ SSI S
Sbjct: 126 SSSLASSSITSSSLASSSITSS 147
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 493 KSFEDIGSYREQIKRVKDAEEVPM 564
+S+ DIG QI+ +K+A E+P+
Sbjct: 188 ESYADIGGLESQIQEIKEAVELPL 211
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 635 LRHLSCSRHVYGPRL*VALVPTSTMGTSSASFTRLI 528
L HL+C + +GP L +VPTS M F + +
Sbjct: 486 LAHLACEKENWGPHL--IIVPTSVMLNWEMEFKKFL 519
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/24 (33%), Positives = 19/24 (79%)
Frame = +1
Query: 496 SFEDIGSYREQIKRVKDAEEVPMV 567
++ D+G +EQI+R+++ E+P++
Sbjct: 177 TYGDVGGCKEQIERLREVVELPLL 200
>SPCC1020.07 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1
Query: 581 LVPTSTMGTSSASFTRLICSRYE--PMSSKLLALLTANTSKNPSPVRMYWS 435
LV T ++ T S T +I RY P S ++ A + TSK S + + WS
Sbjct: 14 LVDTESIYTKS---TNIILKRYNKGPFSMEVKAKMMGRTSKEASRIFLDWS 61
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 4.0
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -1
Query: 509 MSSKLLALLTANTSKNPSPVRMYWSLIAEYSSWPAVSRMSSKHVSPSITT-CLRYESSI 336
+S L + LTA +S+N V + L E + + SK +SP++ C RY+SS+
Sbjct: 428 ISQSLQSSLTAESSRNKELVAGFLMLSEEIGIQKWIIQSLSK-MSPTLNDFCRRYDSSM 485
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 427 PNTLPGQPCPGCRVNTSHRRSRLVYGTN 344
P+T P QPC ++ T + R+VY N
Sbjct: 13 PSTKPSQPC---KIGTDFKGERIVYPAN 37
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 518 YEPMSSKLLALLTANTSKNPSPVRMYWSLIAEYSSWPAVSRMSS 387
Y+ +S+ + A + S N PVR S++AE+ AV + S
Sbjct: 672 YDSVSASISARIKRQNSLNLKPVRFRISVLAEFFGSQAVFVLES 715
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 379 TCLLDILDTAGQEEYSAMRDQYMRTGE-GFLLVFAVNSAKSFEDIGSYREQIKRVKDAEE 555
+C+LD++ T ++ Y R + M+ + G + +++AK E+ + R++ EE
Sbjct: 274 SCMLDLIQTTEEKLYEQYRQEQMKVRQYGEPKLRTIDNAKFKEEEENLRKRFTEQVRVEE 333
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 322 RPRSDSVSAV*SMRIYQRLPHPQPPICTRSSCE 224
R RSDS+ A+ + PPI T S CE
Sbjct: 137 RLRSDSLKALRQFFSSKDFTETNPPIITSSDCE 169
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 454 GEGFLLVFAVNSAKSFEDIGSYREQIKRVKDA 549
G G LL F K + + Y+E+ K KDA
Sbjct: 557 GVGMLLSFFTKQEKLSQSVTEYKEKDKGFKDA 588
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 454 GEGFLLVFAVNSAKSFEDIGSYREQIKRVKDA 549
G G LL F K + + Y+E+ K KDA
Sbjct: 557 GVGMLLSFFTKQEKLSQSVTEYKEKDKGFKDA 588
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,247
Number of Sequences: 5004
Number of extensions: 59290
Number of successful extensions: 205
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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