Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f20f
(390 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 27 1.0
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 27 1.4
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 27 1.4
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 25 4.1
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 4.1
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 4.1
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 5.5
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 5.5
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S... 25 5.5
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1... 24 7.2
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 24 7.2
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 1.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 129 VIKRNIIVALALSGVAGFTFKQLIGNER 212
V R IIV A VA FTF+QL G +
Sbjct: 311 VFGRKIIVPKASGNVAWFTFEQLCGEPK 338
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 210 RKRKYAEFYRTYDAEKE-FEEMRKK 281
RK Y ++Y T+D KE F+E++K+
Sbjct: 375 RKLGYTDYYDTFDGFKETFDELKKQ 399
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 41 NFSKIIIRHGWRKCSIDSEQASDA 112
N SK +I++GW + S++SE SDA
Sbjct: 472 NKSKYLIKNGWFEDSLNSEIWSDA 495
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 25.0 bits (52), Expect = 4.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +2
Query: 284 SIPILLNMNYHSVVLLLFCCE*CY 355
S+ + +YHS + + CC CY
Sbjct: 447 SLLVQYTKDYHSEIAQMLCCSLCY 470
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.0 bits (52), Expect = 4.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 20 TV*LGIFNFSKIIIRHGWRKCSIDSEQAS 106
TV G F + H WRK S DSE S
Sbjct: 167 TVGSGASYFHNCLQAHNWRKYSEDSESMS 195
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 200 NELLEGKTSDARESQSNNNVTFDDGVEET 114
NE+L S++ ++S N T D G ET
Sbjct: 488 NEVLSRPNSNSNSAESRNGETDDSGESET 516
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 225 AEFYRTYDAEKEFEEMRKKGLFQSC 299
A+F+R Y+A K F ++K + C
Sbjct: 856 AKFWRAYNARKTFRGLKKSVIALQC 880
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 188 EGKTSDARESQSNNNVTFDDGVEETSHLRLARCR 87
+GK + S ++VTF D S R +RC+
Sbjct: 313 KGKEASEVNPNSTSSVTFSDFAAAISRSRCSRCK 346
>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 207
Score = 24.6 bits (51), Expect = 5.5
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +3
Query: 120 LNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKG 284
L + ++NI L F QL+ E++ ++A ++ EK ++ K+G
Sbjct: 144 LTPITRKNIHKVLLFRKNGKAEFDQLVQKEKESEHARLKEDHEDEKTVKKDWKRG 198
>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 455
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3
Query: 246 DAEKEFEEMRKKGL 287
+A KEF+E+R+KGL
Sbjct: 25 EAVKEFDELRQKGL 38
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 287 IPILLNMNYHSVVLLLFCCE*CYNLNKKLEGE 382
+P+L N + + CE YN+ K +GE
Sbjct: 89 LPVLYCFNDSDSKIRYYACESMYNIGKVAKGE 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,324,129
Number of Sequences: 5004
Number of extensions: 21639
Number of successful extensions: 79
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -