Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f20f
         (390 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-18|CAI91178.1|   90|Caenorhabditis elegans Hypothetical p...    37   0.006
AL132904-2|CAC35833.1|   86|Caenorhabditis elegans Hypothetical ...    36   0.010
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical p...    26   8.2  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    26   8.2  

>Z73102-18|CAI91178.1|   90|Caenorhabditis elegans Hypothetical
           protein B0035.18 protein.
          Length = 90

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 111 RGLLNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM--RKKG 284
           R +L +  KR I V+LA++ V+   F       R  KY EF+  YD+    +E+    KG
Sbjct: 8   RNMLQSYGKRGIYVSLAVAVVSTAAFNAFYVWPRHNKYEEFFANYDSYTRMKEICSANKG 67

Query: 285 LFQSC 299
              +C
Sbjct: 68  YMHTC 72


>AL132904-2|CAC35833.1|   86|Caenorhabditis elegans Hypothetical
           protein Y111B2A.2 protein.
          Length = 86

 Score = 35.9 bits (79), Expect = 0.010
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 111 RGLLNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM--RKKG 284
           R +L +  KR I V+LA++ V+   F       R  KY EF+  YD     +E+    KG
Sbjct: 4   RNMLQSYGKRGIYVSLAVAVVSTAAFNAFYVWPRHNKYEEFFANYDPYTRMKEICAANKG 63

Query: 285 LFQSC 299
              +C
Sbjct: 64  YMHTC 68


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
           protein W05B2.2 protein.
          Length = 1278

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 278 EGSIPILLNMNYHSVVLLLFCCE*CYNLNKKLEGEK 385
           + S P+     Y S+ +L FCC     ++K L+G +
Sbjct: 743 QNSCPLGFQCTYSSIRMLYFCCRDIVRIDKCLQGSR 778


>Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical
           protein T06E6.5 protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 296 GLE*TLLAHLLKFLFSIIGSVEFSIL-SLALITNELLEGKTSDARESQSNNN 144
           G++ TL+A+   FL    G +E  +  S++LI+ +LLEG        + NNN
Sbjct: 84  GMKQTLVANR-DFLILAAGHLENLLRNSISLISIDLLEGADFSENSDRDNNN 134


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 189 KQLIGNERKRKYAEFYRTYDAEKEFEE 269
           ++L+  E++RKY E      A +E+EE
Sbjct: 677 ERLLEEEKRRKYLELQNEIKAAREYEE 703


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,339,992
Number of Sequences: 27780
Number of extensions: 122125
Number of successful extensions: 390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)