Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f19r
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch...    29   0.88 
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.88 
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    27   3.6  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    26   4.7  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   6.2  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   8.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   8.2  

>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 333

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 523 KFDPRSFKEAMPFKTFVESLPKVFKPGQPYYDVN-IKKDGK 404
           KF+P+ F++ +PF   VE L + F    P + +N I  +GK
Sbjct: 235 KFNPKVFEKNIPFLKAVEQLAQKFGMSMPEFALNFIIANGK 275


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 358 IIGPIWTPAPENVKDSTLDTIILIRNSPDKDEAIKTV*NN 239
           +IGP   P P+  K      I L  N  DKDE   ++ NN
Sbjct: 238 LIGPSTFPLPKRAKKPPRKRITLSINQQDKDEFFDSLINN 277


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -3

Query: 667 LIFSATVPELEKIVSNYLPSGERLNLAGLHYIPSVDKRF 551
           LI  A++ +   +VS  +PS E+   A LH++ +V KR+
Sbjct: 45  LISGASLVKRRMLVSVEIPSKEKSYNAFLHWMSTVPKRY 83


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 370 RSPPIIGPIWTPAPENVKDS 311
           R P I+G ++ PAP  VK+S
Sbjct: 529 RPPIIVGDVYRPAPMTVKES 548


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 25   IVIMLTISELHLYRDLNIIIYKSTYDRSS 111
            +VI + I++L +YR+ N+  YK+  + SS
Sbjct: 976  VVIDVNINKLPMYRESNLTKYKNLQNMSS 1004


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 415 KDGKR-KVKFSAWG-GKRSPPIIGPIWTPAPENVKDSTLD 302
           +D KR +  +S W  G+RS   + P+W P PE   ++ ++
Sbjct: 113 QDVKRFEETYSQWNSGERSTEYV-PVWLPGPEKGSETIIN 151


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 288  IKMMVSRVESLTFSGAGVQMGPIM 359
            + ++V+ V S+TF+G    MGP++
Sbjct: 1643 LPIIVAAVVSMTFAGMACMMGPLL 1666


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,326
Number of Sequences: 5004
Number of extensions: 59238
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)