Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f19r
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70035-13|CAA93874.1|  432|Caenorhabditis elegans Hypothetical p...    34   0.12 
Z47745-6|CAA87667.1|  432|Caenorhabditis elegans Hypothetical pr...    34   0.12 
AL031630-10|CAA20990.1|  363|Caenorhabditis elegans Hypothetical...    28   5.8  

>Z70035-13|CAA93874.1|  432|Caenorhabditis elegans Hypothetical
           protein R09D1.11 protein.
          Length = 432

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 30/115 (26%), Positives = 51/115 (44%)
 Frame = -3

Query: 697 VYKPGSKSSKLIFSATVPELEKIVSNYLPSGERLNLAGLHYIPSVDKRFPLKMMALSAKF 518
           V + G+   KL+FS    +  K  S+ +PS ER+    +  I    + + L  + L  K+
Sbjct: 128 VVRNGNSKIKLMFSIGGKDNSKYFSSVIPSEERIQ-TFIESILEFLEAYDLDGVDLFWKW 186

Query: 517 DPRSFKEAMPFKTFVESLPKVFKPGQPYYDVNIKKDGKRKVKFSAWGGKRSPPII 353
               +++A  +  F+  L K F+  + YY ++I            WG KR   II
Sbjct: 187 PEEEYRDA--YFAFINQLRKTFEAKKKYYILSIVIP---PPTLDGWGKKRLNKII 236


>Z47745-6|CAA87667.1|  432|Caenorhabditis elegans Hypothetical
           protein R09D1.11 protein.
          Length = 432

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 30/115 (26%), Positives = 51/115 (44%)
 Frame = -3

Query: 697 VYKPGSKSSKLIFSATVPELEKIVSNYLPSGERLNLAGLHYIPSVDKRFPLKMMALSAKF 518
           V + G+   KL+FS    +  K  S+ +PS ER+    +  I    + + L  + L  K+
Sbjct: 128 VVRNGNSKIKLMFSIGGKDNSKYFSSVIPSEERIQ-TFIESILEFLEAYDLDGVDLFWKW 186

Query: 517 DPRSFKEAMPFKTFVESLPKVFKPGQPYYDVNIKKDGKRKVKFSAWGGKRSPPII 353
               +++A  +  F+  L K F+  + YY ++I            WG KR   II
Sbjct: 187 PEEEYRDA--YFAFINQLRKTFEAKKKYYILSIVIP---PPTLDGWGKKRLNKII 236


>AL031630-10|CAA20990.1|  363|Caenorhabditis elegans Hypothetical
           protein Y38H6C.11 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +2

Query: 395 NLPLSVFLNVHVVVRLSRFEYLRQRFNERFERHGFFKRSRIKFRAQCHHFQWESFIDARD 574
           NLP+  F N+ V V +   + LRQ   +   +       ++ + A  +H Q+    D+ +
Sbjct: 275 NLPIGSFFNIEVAVIIDHLQVLRQFDVQPKHQPPTIAALQLSYPAYTYHVQFFDVEDSNN 334

Query: 575 IV 580
           I+
Sbjct: 335 IL 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,556,632
Number of Sequences: 27780
Number of extensions: 326316
Number of successful extensions: 796
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)