Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f19f
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    30   0.24 
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    30   0.24 
SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces...    28   1.3  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   2.3  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    27   3.0  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    27   3.0  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    26   3.9  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    26   5.2  
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   6.9  
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.9  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    25   6.9  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    25   9.1  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   9.1  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   9.1  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +3

Query: 291  SDGQYGIVHDGGVQRRRRTADDKEQVRDKRWLPNLADIDKTMYIKNNEVATPFLVGFSGN 470
            +D  Y    D GV       DD+    D   + +  D D  MY  N+++   F+V     
Sbjct: 1853 NDENYEDSEDDGVYEEMEFEDDQSGSADS--VVSEDDADDVMYSDNDDMNIEFMVDEQDA 1910

Query: 471  SDENDTALLDQ 503
            S +ND +  D+
Sbjct: 1911 SSQNDDSSFDE 1921


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 505 TWSSNAVSFSSEFPENPTKNGVATSLFLIYIVLSMSAKLGS 383
           T SS+A  +   FP   T N +AT  + ++++LSMS  + S
Sbjct: 132 TLSSDA-EYEYGFPSTHTTNAMATGFYSLFLLLSMSDSMSS 171


>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 160

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 225 LQYSLPYAN-YFNVPDAQMDPDTSDGQYGIVHD 320
           L  +LPY   Y  VP  Q+D    DG+ GI+ D
Sbjct: 33  LSMALPYQTIYEKVPVTQVDIPAEDGEMGILKD 65


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 439 QLRS*SDFRGTLTKTT--RHYSTKSIRRTSVPGAGSATSQALNTCGRGKDPLAYES 600
           Q RS S    + +K++   H S  S   TSV    S T+  + T G  ++P  YES
Sbjct: 21  QARSHSSSSSSTSKSSASHHSSINSTSATSVYDFSSLTTPIVPTNGVAQEPTLYES 76


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 373 SRTCSLSSAVRRLLCTPPSCTIPYWPSLVSGS 278
           SRT S SS  R +  +PP   I + PS+ S S
Sbjct: 286 SRTSSFSSKHRSVTFSPPDLAILFDPSITSPS 317


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = +3

Query: 204 LDPLDSSLQYSLPYANYF--NVPDAQMDPDTSDGQYGIVHDGGVQR-----RRRTADDKE 362
           LDPL  SL+ +    NYF  N+P+  +  D SD  Y    +  V       R+   +D +
Sbjct: 541 LDPLIGSLENARRIVNYFKKNIPEL-IPNDPSDDDYAAALNYAVNEYVPTYRKTFGNDSK 599

Query: 363 QVRDK 377
           ++++K
Sbjct: 600 KIKNK 604


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 129 LITFSWLGTASLQYINTGGPGADTILD 209
           L+T S  G+A++ YI+  GPG  + +D
Sbjct: 102 LVTQSSTGSANVAYISGNGPGDRSFID 128


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 318 DGGVQRRRRTADDKEQVRDKRW--LPNLADIDKTMYIKNNEVAT 443
           D      RR  +D+E +R++RW  L N+A  +  M +K+    T
Sbjct: 488 DAEYSESRRKKEDEEIIREERWTILENIAK-ENAMKLKSQNPTT 530


>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 425 LNIHSFIDVG*VGKPALVSNLFLIVCCTSSPLHSSIMYNTVL 300
           LN H    V       ++ N FL++ C S  +H + + +TV+
Sbjct: 99  LNEHFSFPVKCCAYQFILRNRFLLIWCNSETIHLTYLIDTVV 140


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 514 FLSTWSSNAVSFSSEFPENPTKNGVATSLFLIYIVLSMSAKL 389
           F++T    A++F   FP  P+K GV   L   Y+  ++ + L
Sbjct: 81  FITTMLDEALAFGV-FPNFPSKMGVTVQLDTTYVAPALCSHL 121


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +3

Query: 168 YINTGGPGADTILDPLDSSLQYSLPYA-NYFNVPDAQMDPDTSDGQYGIVHDGGVQRRRR 344
           Y +TG P  + + D L+   Q   PYA N+ NV   + + +  D Q     D  V   +R
Sbjct: 110 YEDTGLPVINELSDMLEEGYQEVKPYAVNWDNV--LKEEEEGKDSQ----DDPSVLSHKR 163

Query: 345 TADDKEQVRDKRW 383
               KE +   +W
Sbjct: 164 NKSSKELIDAMQW 176


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 481 FSSEFPENPTKNGVATSLFLIYIVLSMSAKLGSQRLSRTCSLSSAVRRLLCTPPS 317
           FSS   + P       S     + +S  AK+G   L+R    S   RR++  PPS
Sbjct: 493 FSSFSYQTPNSASPPFSSLSHTLPISALAKIGHDALNRKNHASLPSRRIVYKPPS 547


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -1

Query: 493 NAVSFSSEFPENPTKNGVATSLFLIYIVLSMSAKLGSQRLSRTC-SLSSAVRR 338
           N++SFSS+   NP K+  + SL       S  ++L + +L+R   SLSS + R
Sbjct: 483 NSISFSSDLFSNPIKSSDSVSL------QSTPSELITSQLTRIAKSLSSVLMR 529


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 472 LTKTTRHYSTKSIRRTSVPGAGSATSQALNTCGRGKDPLAY 594
           LTK  R Y+   +RR++  G  S T +        KDP+ +
Sbjct: 278 LTKKERLYTVDRVRRSNHSGIESKTFKKYQVIEALKDPVTW 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,627
Number of Sequences: 5004
Number of extensions: 57550
Number of successful extensions: 192
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)