Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f19f
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1323 - 26136015-26137876,26138300-26139229,26139922-261400...    30   1.3  
06_03_1057 + 27248249-27249001                                         29   2.3  
02_05_0730 + 31284936-31285085,31285228-31285452,31287058-312872...    29   3.1  
10_08_1028 + 22414928-22415154,22415374-22415558,22416001-22416056     29   4.1  
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350...    29   4.1  
12_02_0335 - 17669232-17670063,17670619-17672150                       28   7.1  
08_01_0334 + 2983306-2983593,2983697-2984116,2984230-2984291,298...    28   7.1  
05_01_0211 + 1591733-1591891,1592761-1592813,1593024-1593240           27   9.4  

>08_02_1323 -
           26136015-26137876,26138300-26139229,26139922-26140068,
           26140139-26140360,26140513-26140555
          Length = 1067

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 324 GVQRRRRTADDKEQVRDKRWLPNLADIDKTMYIKNNEVATPFLVGFSGNSDENDTAL 494
           G+ + R  AD      D+  +P   DID+ ++  + +V    L    G++DE+ TA+
Sbjct: 412 GIDKPRHQADCASLTPDQLVIPKEMDIDEGLHCTDADVGIKTLSSAVGHADEDITAV 468


>06_03_1057 + 27248249-27249001
          Length = 250

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +3

Query: 264 PDAQMDPDTSDGQYGIVHDGGVQRRRRTADDKEQVRDKRWLPNLADIDKTMYIKNNEV 437
           P    +PD    Q+ +V+    Q  ++    +++   + W   L DI++T   KN+ +
Sbjct: 45  PSFPANPDQLSAQHQLVYQQAQQFHQQLQQQQQRQLQQFWAERLVDIEQTTDFKNHSL 102


>02_05_0730 +
           31284936-31285085,31285228-31285452,31287058-31287252,
           31287357-31287418,31287768-31288032
          Length = 298

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
 Frame = -1

Query: 601 GSRTLEDLFHVHMCSKLGLSRFPPQGLKFFLSTWSSNAVSFSSEFPENPTKNGVATSLFL 422
           G + + D F  H+  K+ +S      L  F+ T  +  +S S     +     +A  L +
Sbjct: 35  GEKAIADFFPPHLLKKV-VSEVVATFLLVFM-TCGAAGISGSDLSRISQLGQSIAGGLIV 92

Query: 421 IYIVLSMSAKLGSQRLSRTCSLSSAVRRLLCTPPSCTIP-YWPSLVSGSICASGTLK 254
             ++ ++    G+  ++   +L+ AV R     P   +P YW +  +G+ICAS  LK
Sbjct: 93  TVMIYAVGHISGAH-MNPAVTLAFAVFRHF---PWIQVPFYWAAQFTGAICASFVLK 145


>10_08_1028 + 22414928-22415154,22415374-22415558,22416001-22416056
          Length = 155

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 23  SGTTTPNRIVYLLISVCTSFCYAVIFFKNHVSSLDINYVLLAGHGQSPIHK 175
           +G   P+R +++ I V T  C+ V+F  +H      +  +  G G   +H+
Sbjct: 35  AGRAAPDRSIHI-IPVLTLLCFLVLFLLSH-DPASSSLAIATGRGNDGVHR 83


>03_06_0769 + 36134298-36134356,36134740-36134919,36134975-36135007,
            36135008-36135128,36135227-36135266,36135811-36135863,
            36135937-36135998,36136354-36136506,36136949-36137160,
            36137480-36138972,36140560-36141483,36141734-36142043,
            36143818-36143874,36144114-36144167,36144452-36144510
          Length = 1269

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 402  IDKTMYIKNNEV-ATPFLVGFSGNSDENDTALLDQVDK 512
            ++KT+ I  NEV +TP L+   G + EN+T+  D+  K
Sbjct: 1036 VEKTVVILENEVVSTPPLILPPGRTSENETSSNDRTQK 1073


>12_02_0335 - 17669232-17670063,17670619-17672150
          Length = 787

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 496 SNAVSFSSEFPENPTKNGVATSLFLIYIVLSMSAKLGSQR 377
           +N VS + +FPENP+ +  A  L    +V     +LGS R
Sbjct: 687 ANVVSQNLKFPENPSVSSNAKDLIKGLLVKEPENRLGSLR 726


>08_01_0334 +
           2983306-2983593,2983697-2984116,2984230-2984291,
           2984525-2984672
          Length = 305

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -1

Query: 445 GVATSLFLIYIVLSMSA-KLGSQRLSRTCSLSSAVRRLLCTPPSCTIPYWPSLVSGSICA 269
           G+ATS  L   VL +S   +    L+   S++  V   L  PP+  +PY  + + GSI A
Sbjct: 129 GIATSAGLAVTVLVLSLIHISGCHLNPAVSIAMTVFGHL--PPAHLLPYIAAQILGSITA 186

Query: 268 SGTLK 254
           S  +K
Sbjct: 187 SFAVK 191


>05_01_0211 + 1591733-1591891,1592761-1592813,1593024-1593240
          Length = 142

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 303 YGIVHDGGVQRRRRTA 350
           +G+ H G  QRRRRTA
Sbjct: 19  FGLAHGGAAQRRRRTA 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,281,275
Number of Sequences: 37544
Number of extensions: 395669
Number of successful extensions: 1142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)