Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f19f
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)             27   9.6  
SB_11733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1099

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +3

Query: 195 DTILD-PLDSSLQYSLPYANYF-NVPDAQM---DPDTSD-GQYGIVHDGGVQRRRRTADD 356
           D ++D P   SL     Y NY+ N+ D ++   DP  ++ G  G   +GG  +R   +DD
Sbjct: 43  DGLVDSPQFKSLDELFDYINYYSNLEDEEVSFEDPFLNEAGPSGEQQEGGGVKRPHDSDD 102

Query: 357 KEQVRDK 377
           KE+  DK
Sbjct: 103 KEEDDDK 109


>SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 657

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 303 YGIVHDGGVQRRRRTADDKEQVRDKR 380
           YG   +GG QRRR+ A D+E   + R
Sbjct: 267 YGWAAEGGKQRRRKNAPDEESEEETR 292


>SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 237 LPYANYFNVPDAQMD 281
           +PY+ + NVPDAQ+D
Sbjct: 537 IPYSRHINVPDAQVD 551


>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
          Length = 1198

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 411 FYRCRLSWEASACLEPVPYRLLYVVSFALLHHVQYRI 301
           FY C L W A+       + ++Y +  A++    YRI
Sbjct: 240 FYACTLDWHANKSFSVSIFIIIYFIPQAIMAFSYYRI 276


>SB_11733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 210 PLDSSLQYSLPYANY 254
           PLD S+ YSLPY+ Y
Sbjct: 48  PLDRSVSYSLPYSTY 62



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 210 PLDSSLQYSLPYANY 254
           PLD S+ YSLPY+ Y
Sbjct: 312 PLDRSVSYSLPYSTY 326


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,870,574
Number of Sequences: 59808
Number of extensions: 453470
Number of successful extensions: 1060
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)