Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f19f
(634 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z97056-3|CAB09792.1| 650|Homo sapiens DEAD (Asp-Glu-Ala-Asp) bo... 31 2.6
U59321-1|AAC50787.1| 650|Homo sapiens DEAD-box protein p72 prot... 31 2.6
CR456432-1|CAG30318.1| 652|Homo sapiens DDX17 protein. 31 2.6
BC000595-1|AAH00595.2| 729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 31 2.6
AB209595-1|BAD92832.1| 737|Homo sapiens DEAD box polypeptide 17... 31 2.6
BC056900-1|AAH56900.1| 1504|Homo sapiens nischarin protein. 30 7.8
BC054494-1|AAH54494.1| 1504|Homo sapiens nischarin protein. 30 7.8
BC038102-1|AAH38102.1| 1504|Homo sapiens nischarin protein. 30 7.8
AL117432-1|CAB55920.1| 993|Homo sapiens hypothetical protein pr... 30 7.8
AF082516-1|AAC33104.1| 1504|Homo sapiens I-1 receptor candidate ... 30 7.8
AF058290-1|AAC33321.1| 595|Homo sapiens imidazoline receptor an... 30 7.8
AB023192-1|BAA76819.1| 1528|Homo sapiens KIAA0975 protein protein. 30 7.8
>Z97056-3|CAB09792.1| 650|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 17 protein.
Length = 650
Score = 31.5 bits (68), Expect = 2.6
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +3
Query: 279 DPDTSDGQYGIVHDGGVQRRRRTADDKEQVRDKRW-LPNLADIDKTMYIKNNEVA--TPF 449
D D G +G GG+ ++ + E++R K+W L L +K Y+++ EVA TP+
Sbjct: 10 DRDRDRGGFGARGGGGLPPKK-FGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPY 68
Query: 450 LV 455
V
Sbjct: 69 EV 70
>U59321-1|AAC50787.1| 650|Homo sapiens DEAD-box protein p72
protein.
Length = 650
Score = 31.5 bits (68), Expect = 2.6
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +3
Query: 279 DPDTSDGQYGIVHDGGVQRRRRTADDKEQVRDKRW-LPNLADIDKTMYIKNNEVA--TPF 449
D D G +G GG+ ++ + E++R K+W L L +K Y+++ EVA TP+
Sbjct: 10 DRDRDRGGFGARGGGGLPPKK-FGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPY 68
Query: 450 LV 455
V
Sbjct: 69 EV 70
>CR456432-1|CAG30318.1| 652|Homo sapiens DDX17 protein.
Length = 652
Score = 31.5 bits (68), Expect = 2.6
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +3
Query: 279 DPDTSDGQYGIVHDGGVQRRRRTADDKEQVRDKRW-LPNLADIDKTMYIKNNEVA--TPF 449
D D G +G GG+ ++ + E++R K+W L L +K Y+++ EVA TP+
Sbjct: 10 DRDRDRGGFGARGGGGLPPKK-FGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPY 68
Query: 450 LV 455
V
Sbjct: 69 EV 70
>BC000595-1|AAH00595.2| 729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 17 protein.
Length = 729
Score = 31.5 bits (68), Expect = 2.6
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +3
Query: 279 DPDTSDGQYGIVHDGGVQRRRRTADDKEQVRDKRW-LPNLADIDKTMYIKNNEVA--TPF 449
D D G +G GG+ ++ + E++R K+W L L +K Y+++ EVA TP+
Sbjct: 89 DRDRDRGGFGARGGGGLPPKK-FGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPY 147
Query: 450 LV 455
V
Sbjct: 148 EV 149
>AB209595-1|BAD92832.1| 737|Homo sapiens DEAD box polypeptide 17
isoform p82 variant protein.
Length = 737
Score = 31.5 bits (68), Expect = 2.6
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +3
Query: 279 DPDTSDGQYGIVHDGGVQRRRRTADDKEQVRDKRW-LPNLADIDKTMYIKNNEVA--TPF 449
D D G +G GG+ ++ + E++R K+W L L +K Y+++ EVA TP+
Sbjct: 91 DRDRDRGGFGARGGGGLPPKK-FGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPY 149
Query: 450 LV 455
V
Sbjct: 150 EV 151
>BC056900-1|AAH56900.1| 1504|Homo sapiens nischarin protein.
Length = 1504
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = -1
Query: 367 TCSLSSAVRRLLCTP----PSCTIPYW 299
+C+L SAVRR C P S IPYW
Sbjct: 883 SCTLCSAVRRSCCAPSEAVKSAAIPYW 909
>BC054494-1|AAH54494.1| 1504|Homo sapiens nischarin protein.
Length = 1504
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = -1
Query: 367 TCSLSSAVRRLLCTP----PSCTIPYW 299
+C+L SAVRR C P S IPYW
Sbjct: 883 SCTLCSAVRRSCCAPSEAVKSAAIPYW 909
>BC038102-1|AAH38102.1| 1504|Homo sapiens nischarin protein.
Length = 1504
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = -1
Query: 367 TCSLSSAVRRLLCTP----PSCTIPYW 299
+C+L SAVRR C P S IPYW
Sbjct: 883 SCTLCSAVRRSCCAPSEAVKSAAIPYW 909
>AL117432-1|CAB55920.1| 993|Homo sapiens hypothetical protein
protein.
Length = 993
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = -1
Query: 367 TCSLSSAVRRLLCTP----PSCTIPYW 299
+C+L SAVRR C P S IPYW
Sbjct: 372 SCTLCSAVRRSCCAPSEAVKSAAIPYW 398
>AF082516-1|AAC33104.1| 1504|Homo sapiens I-1 receptor candidate
protein protein.
Length = 1504
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = -1
Query: 367 TCSLSSAVRRLLCTP----PSCTIPYW 299
+C+L SAVRR C P S IPYW
Sbjct: 883 SCTLCSAVRRSCCAPSEAVKSAAIPYW 909
>AF058290-1|AAC33321.1| 595|Homo sapiens imidazoline receptor
antisera-selected protein protein.
Length = 595
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = -1
Query: 367 TCSLSSAVRRLLCTP----PSCTIPYW 299
+C+L SAVRR C P S IPYW
Sbjct: 415 SCTLCSAVRRSCCAPSEAVKSAAIPYW 441
>AB023192-1|BAA76819.1| 1528|Homo sapiens KIAA0975 protein protein.
Length = 1528
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = -1
Query: 367 TCSLSSAVRRLLCTP----PSCTIPYW 299
+C+L SAVRR C P S IPYW
Sbjct: 907 SCTLCSAVRRSCCAPSEAVKSAAIPYW 933
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,072,261
Number of Sequences: 237096
Number of extensions: 2261685
Number of successful extensions: 5138
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5138
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -