Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f19f
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-6|AAK82897.1|  527|Caenorhabditis elegans Hypothetical ...    31   0.91 
AF003386-5|AAK82898.1|  529|Caenorhabditis elegans Hypothetical ...    31   0.91 
Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical pr...    30   1.2  
EF601082-1|ABQ96204.1|  370|Caenorhabditis elegans UNC-55a isofo...    30   1.2  
EF601077-1|ABQ96199.1|  357|Caenorhabditis elegans UNC-55b isofo...    30   1.2  
AF003386-2|AAB54255.1|  527|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF003386-1|AAK82899.1|  529|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr...    29   2.1  
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec...    29   2.1  
U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    24   2.7  
U58757-5|AAC47919.3|  555|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z22176-7|CAA80137.1|  910|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AF003386-6|AAK82897.1|  527|Caenorhabditis elegans Hypothetical
           protein F59E12.4a protein.
          Length = 527

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 496 SNAVSFSSEFPENPTKNGVATSLFLIYIVLSMSAKLGSQRLSRTCSLSSAVRR 338
           +N + +SSEF +N          FL+Y+V +   ++  + + R C    A  R
Sbjct: 397 ANLIQYSSEFSKNQFLEQATNFHFLLYLVTNDQVQISDEWMKRLCDAVKAQDR 449


>AF003386-5|AAK82898.1|  529|Caenorhabditis elegans Hypothetical
           protein F59E12.4b protein.
          Length = 529

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 496 SNAVSFSSEFPENPTKNGVATSLFLIYIVLSMSAKLGSQRLSRTCSLSSAVRR 338
           +N + +SSEF +N          FL+Y+V +   ++  + + R C    A  R
Sbjct: 397 ANLIQYSSEFSKNQFLEQATNFHFLLYLVTNDQVQISDEWMKRLCDAVKAQDR 449


>Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical
           protein F55D12.4 protein.
          Length = 424

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 397 AKLGSQRLSRTCSLSSAVRRLLCTPPSCTIPYWPSLVS 284
           ++L   RL  T  L + +  LL TPP  T+P++P L S
Sbjct: 385 SRLFFSRLLGTTPLETILSDLLITPPPPTLPFFPQLPS 422


>EF601082-1|ABQ96204.1|  370|Caenorhabditis elegans UNC-55a isoform
           protein.
          Length = 370

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 397 AKLGSQRLSRTCSLSSAVRRLLCTPPSCTIPYWPSLVS 284
           ++L   RL  T  L + +  LL TPP  T+P++P L S
Sbjct: 331 SRLFFSRLLGTTPLETILSDLLITPPPPTLPFFPQLPS 368


>EF601077-1|ABQ96199.1|  357|Caenorhabditis elegans UNC-55b isoform
           protein.
          Length = 357

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 397 AKLGSQRLSRTCSLSSAVRRLLCTPPSCTIPYWPSLVS 284
           ++L   RL  T  L + +  LL TPP  T+P++P L S
Sbjct: 318 SRLFFSRLLGTTPLETILSDLLITPPPPTLPFFPQLPS 355


>AF003386-2|AAB54255.1|  527|Caenorhabditis elegans Hypothetical
           protein F59E12.5a protein.
          Length = 527

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -1

Query: 496 SNAVSFSSEFPENPTKNGVATSLFLIYIVLSMSAKLGSQRLSRTCSLSSAVRR 338
           +N + +SSEF  N          FL+Y+V +   ++  + + R C    A  R
Sbjct: 397 ANLIQYSSEFSTNQFLEQATNFHFLLYLVTNDQVQISDEWMKRLCDAVKAQDR 449


>AF003386-1|AAK82899.1|  529|Caenorhabditis elegans Hypothetical
           protein F59E12.5b protein.
          Length = 529

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -1

Query: 496 SNAVSFSSEFPENPTKNGVATSLFLIYIVLSMSAKLGSQRLSRTCSLSSAVRR 338
           +N + +SSEF  N          FL+Y+V +   ++  + + R C    A  R
Sbjct: 397 ANLIQYSSEFSTNQFLEQATNFHFLLYLVTNDQVQISDEWMKRLCDAVKAQDR 449


>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical
           protein C29E6.2 protein.
          Length = 1193

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 408 KTMYIKNNEVATPFLVGFSGNSDENDTALLDQVDKKNFSPW 530
           K + + NNE  TP  +   GN  E    +L Q++KKN   W
Sbjct: 251 KALNLFNNEKKTPLRMAVEGNHPETLKKIL-QMEKKNSCKW 290


>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient
           receptor potential subfamilyA-1 protein.
          Length = 1206

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 408 KTMYIKNNEVATPFLVGFSGNSDENDTALLDQVDKKNFSPW 530
           K + + NNE  TP  +   GN  E    +L Q++KKN   W
Sbjct: 269 KALNLFNNEKKTPLRMAVEGNHPETLKKIL-QMEKKNSCKW 308


>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 23.8 bits (49), Expect(2) = 2.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 50  VYLLISVCTSFCYAVIFFKNHVSSLDINYVLLAGHGQSPIHKH 178
           V++ I V  S    + F  +H  S D +Y   +G G+   HKH
Sbjct: 6   VFISIGVVLSVVNCIFF--DHGDSSDGSYSDSSGEGRGHHHKH 46



 Score = 23.8 bits (49), Expect(2) = 2.7
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 155 GQSPIHKHRWSWC*YYF-GSPGLQSA 229
           G S IH+ R  WC   F G+ GL+ +
Sbjct: 76  GWSLIHRRRGPWCIQVFNGAAGLEGS 101


>U58757-5|AAC47919.3|  555|Caenorhabditis elegans Hypothetical
           protein C01B10.9 protein.
          Length = 555

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 80  FCYAVIFFKNHVSSLDINYVLLAGHGQSPIHKHRWSWC 193
           F Y +  F ++    D+N +L A HG + I  H+   C
Sbjct: 226 FLYFIKKFDDNNLGADVNIILTADHGHAEIKDHKHVMC 263


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +3

Query: 168  YINTGGPGADTILDPLDSSLQYSLPYANYFNVPDAQMDPDTSDGQYGIVHDGGVQRRRRT 347
            ++  G  G   + D L+ + ++   +    N P   + PDT +G Y +   G  Q R + 
Sbjct: 1904 FVIKGTSGNSKLSDHLERTKRHDCQWPENPNHPHESIHPDTPNGPYRL--KGLKQERPKR 1961

Query: 348  ADDKEQ 365
            A D+ +
Sbjct: 1962 ASDRSK 1967


>Z22176-7|CAA80137.1|  910|Caenorhabditis elegans Hypothetical
           protein ZK1098.8 protein.
          Length = 910

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 519 SSSYRLGRVMPCRFRQSSPKIRLRTELLL 433
           SSSY+L  VM   FRQ   K+R   ELL+
Sbjct: 351 SSSYQLPNVMRDFFRQPDSKLREAKELLV 379


>AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical
           protein W10G11.17 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 22/96 (22%), Positives = 43/96 (44%)
 Frame = +3

Query: 195 DTILDPLDSSLQYSLPYANYFNVPDAQMDPDTSDGQYGIVHDGGVQRRRRTADDKEQVRD 374
           D + D  D   ++ + +   F+    ++  D  DG +  +H    ++RRR    K ++R 
Sbjct: 199 DDVWDYRDMEKRFKVRHQVVFD--GNEIGEDELDGSFPSIHQASNRKRRRHVVLKTKIRR 256

Query: 375 KRWLPNLADIDKTMYIKNNEVATPFLVGFSGNSDEN 482
           +R     A  D+    K++E     +   SG +DE+
Sbjct: 257 RRRRKRAAGSDEEDEKKSSETVID-VHQDSGENDED 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,506
Number of Sequences: 27780
Number of extensions: 329130
Number of successful extensions: 1031
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)