Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f16r
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    28   1.0  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    28   1.4  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   1.4  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    27   1.8  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    27   1.8  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   3.1  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    27   3.1  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    26   4.2  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   4.2  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    25   7.3  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   7.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   9.6  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   9.6  

>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 502 MDSWSSITXYPQIWVSTKYCKRAWRI 579
           +DSWSSIT Y    V  +   +AW +
Sbjct: 77  VDSWSSITKYDNYTVENESYAKAWHL 102


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 204 RTLNFVSTTEVGSPSAPIFTVLVGW 278
           + L+ +S   VGSPSAPI   L  W
Sbjct: 523 KNLSLMSYVSVGSPSAPIIEFLEEW 547


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
 Frame = +3

Query: 207 TLNFVSTTEVGS--PSAPIF---TVLVGWYNENVISLAIHSRNSSLFLSKLLQASNSIHS 371
           T +FV TT   S  P    F   T   G++N +V S+A+H+  +    S  +  + S + 
Sbjct: 154 TTSFVPTTTESSIHPITTGFYNTTFTTGYFNTSVTSVAVHNSTTVFPTSVPIVNTTSFNV 213

Query: 372 SLNPDSLKALVSPNLKLCCLKALIT 446
           +  P S     SP+  L  +  LI+
Sbjct: 214 TTIPSSAVHYASPSGLLALVVMLIS 238


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = -1

Query: 571 MLVYNTLLKPKSAGXLLLKTK--NPF-DKPLLYADYYKDIED 455
           ++VY  +++P+S    +L++    PF  +  +Y DYY DI+D
Sbjct: 408 IVVYQEIIQPESDIRYILESAATGPFLPRVEIYEDYYNDIKD 449


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 408 ARPKPSRNLDLSWNGLSWMPAKALIRTATNS*NVLLGKLHSHCTTQRV 265
           + P  S N+D S N LS   +K  +     + N+ LG LH + T  R+
Sbjct: 44  SEPHESANVDESVNKLSKTFSKLSLNPTFQALNMDLGLLHENITLDRI 91


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 559 NTLLKPKSAGXLLLKTKNPFDKPLLYADYYKD 464
           N   K  +AG +L++ +   D P+L+  +YKD
Sbjct: 670 NLAKKKSTAGFVLVQLRKLADHPMLFRIHYKD 701


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +3

Query: 267 LVGWYNENVISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALV 404
           ++G Y+  +  L  H R+ + FL+ L QAS   H  + PD+L+ LV
Sbjct: 356 VLGLYSFLMKYLTPHQRDVTQFLACLAQAS---HEFVPPDALEPLV 398


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 347 AGI-QLNPFQLKSRFLEGFGLAQSQTMLFES 436
           AG+ QLN F L   F+EG+  +Q+  ++F++
Sbjct: 10  AGLKQLNDFLLDKSFIEGYEPSQADAVVFKA 40


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 262  VKMGADGDPTSVVDTKLRVRNVTGLRVMDASIMPSVIRGNTXAPSIM 122
            V  GADGD    +DT L    VT    ++ S     +   T AP+ +
Sbjct: 1575 VYYGADGDDQKSIDTYLSKLVVTAFNELEKSACIYRVNEETYAPTTL 1621


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 391 KESGFKLEWIELDACKSFDKNSDEFLECI 305
           +++G K  W E++  K+   + DE LECI
Sbjct: 67  EQNGGKFGWFEVEDFKNTYGSWDESLECI 95


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 342 LLQASNSIHSSLNPDSLKALVSPN-LKLCCLKALITVXKSSIS 467
           LL+  N IHS + PD++      N LK+C L +     ++ I+
Sbjct: 276 LLKQCNVIHSDIKPDNMLVNEKRNILKICDLGSASDASENEIT 318


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 439 RAFKQHSLRLGETKAFKESGFKLEWIE-LDACKSFDKNSDEFLECI 305
           R   ++ +RL ETK F E+ F   W++ L A K      D+ L  +
Sbjct: 547 RTTVEYLVRLLETKEFSENEFTTGWLDRLIAQKVTSARPDKMLAVV 592


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 457 LRYPCSNQHT 486
           LR PCSNQHT
Sbjct: 231 LRIPCSNQHT 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,158
Number of Sequences: 5004
Number of extensions: 58597
Number of successful extensions: 183
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)