Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f16r
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 39 0.003
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 38 0.007
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 36 0.028
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 34 0.11
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 33 0.26
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 32 0.46
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 31 1.1
10_08_0397 + 17571492-17571664,17571875-17572034,17572140-175722... 30 1.4
09_02_0027 + 3105963-3106276,3106298-3107027,3107069-3107134,310... 30 1.9
03_05_0451 - 24456923-24457069,24457161-24457310,24457408-244575... 29 2.5
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 29 2.5
01_05_0177 - 18968803-18968855,18969053-18969109,18969975-18970518 29 4.3
06_03_0875 - 25584789-25585307,25585424-25585570,25585734-255858... 28 5.7
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330... 28 5.7
01_07_0352 - 42958903-42959010,42959928-42960142,42960651-429607... 28 5.7
11_03_0098 - 9981374-9981414,9982091-9982305,9982334-9982635 28 7.5
07_01_1139 - 10684647-10685837,10685877-10686251,10686351-106865... 28 7.5
06_03_0848 - 25334701-25334949,25335076-25335184,25335667-253357... 28 7.5
05_06_0138 + 25946545-25946632,25946715-25947489,25947627-259479... 28 7.5
01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199... 28 7.5
11_06_0577 - 25158833-25162864 27 9.9
09_04_0326 - 16694715-16695857 27 9.9
01_07_0279 + 42449197-42449310,42449398-42449835 27 9.9
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 39.1 bits (87), Expect = 0.003
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 10/171 (5%)
Frame = -1
Query: 565 VYNTLLKPKSAGXLLLKTKNPFDKPLLYADYYKDIEDLXTVIRAFKQHSLRLGETKAFKE 386
+ +L P S+G + L+T +P P + +Y+++ EDL + + R+ +++AF
Sbjct: 421 ILEKILGPVSSGHVELRTTDPRANPSVTFNYFREAEDLERCVHGIETIE-RVIQSRAFSN 479
Query: 385 ---SGFKLEWIELDACK------SFDKNSDEFLECIAREITFSLYHPTSTVKMGADGDPT 233
+ +E I D+ N E + +++H +GA
Sbjct: 480 FTYANASVESIFTDSANFPVNLLPRHVNDSRSPEQYCMDTVMTIWHYHGGCHVGA----- 534
Query: 232 SVVDTKLRVRNVTGLRVMDASIMPSVIRGNTXAPSIMIGE-KGADMIKKHW 83
VVD RV V GLRV+D+S N A +M+G G + + W
Sbjct: 535 -VVDDDYRVFGVQGLRVIDSSTFKYSPGTNPQATVMMLGRYMGVKIQSERW 584
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 37.9 bits (84), Expect = 0.007
Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 9/159 (5%)
Frame = -1
Query: 565 VYNTLLKPKSAGXLLLKTKNPFDKPLLYADYYKDIEDLXTVIRAFK--QHSLRLGETKAF 392
+ +L P S G L L+ +NP D P + +Y+ EDL + + +R F
Sbjct: 418 ILEKILGPLSTGHLELRNRNPDDNPSVTFNYFAHPEDLRRCVAGVSVIERVIRSEAFANF 477
Query: 391 KESGFKLEWIELDACKSF-------DKNSDEFLECIAREITFSLYHPTSTVKMGADGDPT 233
F +E + L+ F N LE ++ +++H ++
Sbjct: 478 TYPYFSVETL-LNMTAGFPVNLRPRHDNDSTSLEQFCKDTVMTIWHYHGGCQV------N 530
Query: 232 SVVDTKLRVRNVTGLRVMDASIMPSVIRGNTXAPSIMIG 116
VVD + RV V LRV+D S + N A +M+G
Sbjct: 531 RVVDAEYRVIGVDALRVIDGSTFNASPGTNPQATVMMLG 569
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 35.9 bits (79), Expect = 0.028
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 13/174 (7%)
Frame = -1
Query: 565 VYNTLLKPKSAGXLLLKTKNPFDKPLLYADYYKDIEDLXTVIRAFKQHSLRLGETKAFKE 386
+ +L P S G + L++ +P P + +Y++D D+ +R + R+ ++AF
Sbjct: 417 ILEKILGPMSTGHVALRSADPDANPAVTFNYFRDPRDVERCVRGIETIE-RVVRSRAFAR 475
Query: 385 SGFK----LEWIELDA------CKSFDKNSDEF--LECIAREITFSLYHPTSTVKMGADG 242
+ +E L + + + L+ RE +++H +GA
Sbjct: 476 FTYANVTAMEAAVLGRRAGHLPVNLLPRRATDTRPLQQYCRETVMTIWHYHGGCHVGA-- 533
Query: 241 DPTSVVDTKLRVRNVTGLRVMDASIMPSVIRGNTXAPSIMIGE-KGADMIKKHW 83
VVD RV V GLRV+D+S N A +M+G G + K+ W
Sbjct: 534 ----VVDQDYRVLGVRGLRVVDSSTFKYSPGTNPQATVMMLGRYMGLKIQKERW 583
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 33.9 bits (74), Expect = 0.11
Identities = 39/160 (24%), Positives = 63/160 (39%), Gaps = 10/160 (6%)
Frame = -1
Query: 565 VYNTLLKPKSAGXLLLKTKNPFDKPLLYADYYKDIEDLXTVIR--AFKQHSLRLGETKAF 392
+ +L P+S G L L+ +P D P + +Y+ +DL A + +R F
Sbjct: 410 ILEKVLGPQSTGRLALRNLDPDDNPTVSFNYFSHPDDLRRCAAGIATIERVIRSRAFSRF 469
Query: 391 KESGFKLEWIELDACKSFDKN-------SD-EFLECIAREITFSLYHPTSTVKMGADGDP 236
F ++ F N SD LE R+ +++H ++G
Sbjct: 470 AYPNFAFP-ATINVTAEFPANLMRMRGGSDPRALEQFCRDTVMTIWHYHGGCQVG----- 523
Query: 235 TSVVDTKLRVRNVTGLRVMDASIMPSVIRGNTXAPSIMIG 116
VVD RV + LRV+D S + N A +M+G
Sbjct: 524 -RVVDRDYRVLGIEALRVIDGSTFNASPGTNPQATVMMLG 562
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 32.7 bits (71), Expect = 0.26
Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 11/177 (6%)
Frame = -1
Query: 613 VHDKFRKMNENKYAMLVYNTLLKPKSAGXLLLKTKNPFDKPLLYADYYKDIEDLXTVIRA 434
VH K+ E + + + P S G L+L + P + +Y++ +DL +
Sbjct: 412 VHKKYNLPKEVFSGGFILSKIDGPLSTGNLVLVDTDINSNPTVTFNYFQHPKDLSRCVYG 471
Query: 433 FKQHSLRLGETKAFKE-----SGFKLEWI-ELDACKSFD-----KNSDEFLECIAREITF 287
K R+ +T F G+ +E + + + + N +E R+
Sbjct: 472 IKTIE-RILKTNHFTNFTLNGGGYPMEVVLNMSVTANINLIPKHTNDSTSMEQFCRDTVV 530
Query: 286 SLYHPTSTVKMGADGDPTSVVDTKLRVRNVTGLRVMDASIMPSVIRGNTXAPSIMIG 116
+++H +G VVD + RV V+GLRV+D S + N A +M+G
Sbjct: 531 TIWHYHGGCHVG------KVVDQQYRVIGVSGLRVIDGSTLFRSPGTNPQATVMMMG 581
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 31.9 bits (69), Expect = 0.46
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 11/161 (6%)
Frame = -1
Query: 544 PKSAGXLLLKTKNPFDKPLLYADYYKDIEDLXTVIRAFKQHSLRLGETKAFKE-----SG 380
P S G L L + P + +Y+ +DL + K R+ +T F E G
Sbjct: 421 PLSTGHLALIDTDVKKNPAVTFNYFSHPQDLTRCVYGIKTIE-RILKTNRFSELSANTDG 479
Query: 379 FKLEWI---ELDACKSF---DKNSDEFLECIAREITFSLYHPTSTVKMGADGDPTSVVDT 218
+E + + A + N E LE R+ +++H +G VVD
Sbjct: 480 HSMERVLNMSVQANVNLIPKHTNDTESLEQFCRDTVITIWHYHGGCHVG------KVVDQ 533
Query: 217 KLRVRNVTGLRVMDASIMPSVIRGNTXAPSIMIGEKGADMI 95
+ RV V+G+RV+D S N A +M+G MI
Sbjct: 534 QHRVLGVSGVRVVDGSTFSRSPGTNPQATVMMMGRYFGVMI 574
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 484 YADYYKDIEDLXTVIRAFKQH 422
Y +YYK+++DL VI FK+H
Sbjct: 135 YGNYYKEVDDLRDVILHFKKH 155
>10_08_0397 +
17571492-17571664,17571875-17572034,17572140-17572222,
17572333-17572468,17572515-17572610,17573105-17573218,
17573322-17573405,17573493-17573648,17573744-17573818,
17574318-17574424,17574508-17574688,17574832-17575020,
17575397-17575477,17575621-17575755,17576007-17576329,
17576503-17576608,17576734-17576883,17577034-17577180
Length = 831
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 87 CFLIMSAPFSPIMIEGAXVLPLITEGIILASITLRP---VTFRTLNFVSTTEVGSPSAP 254
CF ++SAP + + A PLI+ G + + ++ RTL+ S+ EVGS + P
Sbjct: 558 CFQLVSAPIDELFPDDA---PLISSGFRVIPLDMKTDGTPAGRTLDLASSLEVGSTAQP 613
>09_02_0027 +
3105963-3106276,3106298-3107027,3107069-3107134,
3107192-3107324,3108985-3109088
Length = 448
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 92 LDHVSSFLTDHDRRSXSITSDYGRHYTCVHYSEAGNVSN 208
LD + L DHD+RS H TC Y G+ N
Sbjct: 273 LDLLRKQLDDHDKRSQGTVKALDLHVTCEVYGSTGHSGN 311
>03_05_0451 -
24456923-24457069,24457161-24457310,24457408-24457513,
24457715-24458040,24458129-24458263,24458350-24458430,
24458516-24458704,24458794-24458986,24459068-24459174,
24459280-24459354,24459446-24459601,24459745-24459828,
24459933-24460046,24460119-24460214,24460302-24460392,
24460500-24460615,24460878-24461037,24461964-24462217
Length = 859
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +3
Query: 87 CFLIMSAPFSPIMIEGAXVLPLITEGIILASITLRPVTFRTLNFVSTTEVGS 242
C ++ AP + A +LP I L T P RTL+ ST EVGS
Sbjct: 585 CAQLVFAPIDESFADDAPLLPSGFRVIPLDGKTDAPSATRTLDLASTLEVGS 636
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 29.5 bits (63), Expect = 2.5
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Frame = -1
Query: 472 YKDIEDLXTVIRAFKQHSLRLGETKAFKESGFKLEWIELDACKSFDKNSDEFLE-CIARE 296
YK + + TV+ K + ETK F F L I +N + L C+ E
Sbjct: 455 YKGVLEDKTVVAIKKSKMMEEAETKEFAREMFILSQIN-------HRNVVKLLGCCLEVE 507
Query: 295 ITFSLYHPTSTVKM-----GADGDPTSVVDTKLRV--RNVTGLRVMDASIMPSVIRGNTX 137
+ +Y S + G + +DT+LR+ + L M +S P ++ G+
Sbjct: 508 VPMLVYEFVSNGTLYHYIHGKEPKADIPLDTRLRIAAESAEALSYMHSSASPPILHGDVK 567
Query: 136 APSIMIGEK 110
+I++ +K
Sbjct: 568 TANILLDDK 576
>01_05_0177 - 18968803-18968855,18969053-18969109,18969975-18970518
Length = 217
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 316 LECIAREITFSLYHPTSTVKMGADGDPTSVVDTKLRVRNVTGLRVMD 176
++C R+ L T+T++M A G P +D L++ T L+ +D
Sbjct: 111 VDCSGRQGLSPLQKCTTTMRMLAYGSPADSLDEYLKIGKSTSLQCLD 157
>06_03_0875 -
25584789-25585307,25585424-25585570,25585734-25585897,
25586015-25586172,25586536-25586904,25586998-25587209,
25587439-25588059,25588561-25588699,25588968-25589044,
25589120-25589800,25590641-25590889
Length = 1111
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 253 GADGDPTSVVDTKLRVRNVTGLRVMDASIMPSVIRGNTXAPSIM 122
G G VV L++ N TGL VM AS S+I+G S +
Sbjct: 457 GVIGHVIEVVTQSLKI-NATGLTVMQASGKSSLIKGTAIGSSYL 499
>04_03_0068 -
10631827-10631947,10632037-10632112,10632152-10633021,
10650975-10651599
Length = 563
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 86 VLLDHVSSFLTDHDRRSXSITSDYGRHYTCVHYSEAGNVSN 208
++L+ + L DHD+R S H TC Y G+ N
Sbjct: 323 LMLNLLMKRLDDHDKRPQSTVKALDSHVTCEVYGGTGHSGN 363
>01_07_0352 -
42958903-42959010,42959928-42960142,42960651-42960773,
42960884-42960973,42961057-42961164,42961623-42961808,
42961858-42961923,42962312-42962495
Length = 359
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 297 SLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALVSPNLKLCCL 431
+L+ H R+ +L S +Q SN L S+ ++ N +L CL
Sbjct: 81 ALSSHGRSETLQTSSAVQGSNKTKYDLTGQSITNAIATNDQLSCL 125
>11_03_0098 - 9981374-9981414,9982091-9982305,9982334-9982635
Length = 185
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -1
Query: 319 FLECIAREITFSLYHPTSTVKMGADGDPTSVVDTKLRVRNVTGLRVMD 176
+++C R+ L T+ ++M A G P +D L++ T L+ +D
Sbjct: 101 WVDCSGRQGLSPLQKCTAAIRMLAYGSPADSLDEYLKIGKSTSLQCLD 148
>07_01_1139 -
10684647-10685837,10685877-10686251,10686351-10686534,
10686699-10686895
Length = 648
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +2
Query: 92 LDHVSSFLTDHDRRSXSITSDYGRHYTCVHYSEAGNVSN 208
LD + L DHD+R H TC Y G+ N
Sbjct: 136 LDLLMKRLDDHDKRPQGTVMALDSHVTCEVYGNTGHSGN 174
>06_03_0848 -
25334701-25334949,25335076-25335184,25335667-25335701,
25335793-25335843,25335941-25336018,25336214-25336351,
25336664-25336729,25337387-25337572
Length = 303
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -1
Query: 418 LRLGETKAFKE-SGFKLEWIELDAC----KSFDKNSDEFLECIAREITFSLYHPTSTVK 257
+ LG + KE +G E++E+ A K+F SD F CI R ++F + S ++
Sbjct: 160 INLGAVREVKEETGIDTEFVEVLAFRQSHKAFFDKSDLFFVCILRPLSFDITKQDSEIE 218
>05_06_0138 +
25946545-25946632,25946715-25947489,25947627-25947910,
25948100-25948238,25948323-25948394,25948477-25948548,
25948726-25948806,25948894-25949054,25949162-25949424,
25949661-25949787,25949974-25950042,25950154-25950346,
25950446-25950860
Length = 912
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 498 TSHYCMLITTRISKICXLLSGLSNSIV*DWARPKPSRNLDLSWNGLS 358
T Y + RI+ + +GLS I +A K +NLDLS N L+
Sbjct: 415 TCSYAISTPPRITGVNMSYAGLSGDISSYFANLKEIKNLDLSHNNLT 461
>01_06_1473 - 37619415-37619561,37619649-37619723,37619800-37619919,
37620074-37620127,37620204-37620426,37620506-37620585,
37620675-37620764,37620847-37620960,37621192-37621272,
37621383-37621490,37621677-37621722,37621802-37621899,
37621975-37622148,37622456-37622548,37623229-37623285,
37623399-37623438,37623567-37623685,37624179-37624298,
37624723-37624815,37624940-37625251,37625325-37625444,
37625545-37625658,37625731-37625910,37625996-37626110,
37626195-37626358,37626584-37626769,37626888-37626978,
37627089-37627153,37627223-37627297,37627410-37627493,
37627575-37627742,37628160-37629293
Length = 1579
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 339 KLLQASNSIHSSLNPDSLKALVSPNLKLCCLK 434
K++Q +S+HS P ++ AL+ N K CL+
Sbjct: 1106 KVIQERDSMHSGERPVNISALMQVNKKYRCLE 1137
>11_06_0577 - 25158833-25162864
Length = 1343
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 373 LEWIELDACKSFDKNSDEFLECIAREITFSLY 278
L+ ++L+ C+SFDKN + +LE I ++ Y
Sbjct: 868 LKVLDLEGCQSFDKN-NHYLEDICNKVLLLKY 898
>09_04_0326 - 16694715-16695857
Length = 380
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 423 IV*DWARPKPSRNLD-LSWNGLSWMPAKALIR 331
++ W+R P D + +N LSW+P+K+LIR
Sbjct: 4 VINSWSRFMPHYIPDDVMFNILSWLPSKSLIR 35
>01_07_0279 + 42449197-42449310,42449398-42449835
Length = 183
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 287 LIVPPNEYGEDGGRW*PDLRSGHEIEGSKRYRP 189
+I PPN+YG G P GH+ S RP
Sbjct: 146 MIRPPNQYGAAGSAPPPTAGGGHQPATSSYLRP 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,393,248
Number of Sequences: 37544
Number of extensions: 360416
Number of successful extensions: 1106
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -