Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f16r
(658 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase p... 97 5e-20
AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase p... 97 5e-20
Y10931-1|CAA71861.1| 1142|Homo sapiens symplekin protein. 33 0.90
U49240-1|AAC50667.1| 1142|Homo sapiens symplekin protein. 33 0.90
BC030214-1|AAH30214.1| 533|Homo sapiens SYMPK protein protein. 33 0.90
BC006567-1|AAH06567.1| 1142|Homo sapiens SYMPK protein protein. 33 0.90
BC006536-1|AAH06536.1| 1142|Homo sapiens SYMPK protein protein. 33 0.90
AB210010-1|BAE06092.1| 1073|Homo sapiens SYMPK variant protein p... 33 0.90
AB209024-1|BAD92261.1| 686|Homo sapiens SYMPK protein variant p... 33 0.90
U48736-1|AAB03268.1| 496|Homo sapiens serine/threonine-protein ... 31 4.8
BC034969-1|AAH34969.1| 1007|Homo sapiens PRP4 pre-mRNA processin... 31 4.8
BC009844-1|AAH09844.1| 496|Homo sapiens PRPF4B protein protein. 31 4.8
AY029347-1|AAK38155.1| 1007|Homo sapiens serine/threonine-protei... 31 4.8
AL138831-3|CAI20480.1| 1007|Homo sapiens PRP4 pre-mRNA processin... 31 4.8
AL033383-1|CAI42121.1| 1007|Homo sapiens PRP4 pre-mRNA processin... 31 4.8
AF283465-1|AAM19101.1| 1007|Homo sapiens PRP4 kinase protein. 31 4.8
AB011108-1|BAA25462.1| 1028|Homo sapiens KIAA0536 protein protein. 31 4.8
>BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase
protein.
Length = 594
Score = 97.1 bits (231), Expect = 5e-20
Identities = 67/183 (36%), Positives = 99/183 (54%), Gaps = 3/183 (1%)
Frame = -1
Query: 631 HGLSEEVHDKFRKMNENKYAMLVYNTLLKPKSAGXLLLKTKNPFDKPLLYADYYK---DI 461
H L +V D R + + A V+ ++ S G L L++ NP D P++ +Y DI
Sbjct: 401 HFLPSQVIDHGRVPTQQE-AYQVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDI 459
Query: 460 EDLXTVIRAFKQHSLRLGETKAFKESGFKLEWIELDACKSFDKNSDEFLECIAREITFSL 281
ED ++ ++ + +A + F+ + ++ + DK D F+ A S
Sbjct: 460 EDFRLCVKLTRE----IFAQEAL--APFRGKELQPGSHIQSDKEIDAFVRAKAD----SA 509
Query: 280 YHPTSTVKMGADGDPTSVVDTKLRVRNVTGLRVMDASIMPSVIRGNTXAPSIMIGEKGAD 101
YHP+ T KMG DPT+VVD + RV V LRV+DASIMPS++ GN AP+IMI EK AD
Sbjct: 510 YHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAAD 569
Query: 100 MIK 92
+IK
Sbjct: 570 IIK 572
>AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase
protein.
Length = 482
Score = 97.1 bits (231), Expect = 5e-20
Identities = 67/183 (36%), Positives = 99/183 (54%), Gaps = 3/183 (1%)
Frame = -1
Query: 631 HGLSEEVHDKFRKMNENKYAMLVYNTLLKPKSAGXLLLKTKNPFDKPLLYADYYK---DI 461
H L +V D R + + A V+ ++ S G L L++ NP D P++ +Y DI
Sbjct: 289 HFLPSQVIDHGRVPTQQE-AYQVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDI 347
Query: 460 EDLXTVIRAFKQHSLRLGETKAFKESGFKLEWIELDACKSFDKNSDEFLECIAREITFSL 281
ED ++ ++ + +A + F+ + ++ + DK D F+ A S
Sbjct: 348 EDFRLCVKLTRE----IFAQEAL--APFRGKELQPGSHIQSDKEIDAFVRAKAD----SA 397
Query: 280 YHPTSTVKMGADGDPTSVVDTKLRVRNVTGLRVMDASIMPSVIRGNTXAPSIMIGEKGAD 101
YHP+ T KMG DPT+VVD + RV V LRV+DASIMPS++ GN AP+IMI EK AD
Sbjct: 398 YHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAAD 457
Query: 100 MIK 92
+IK
Sbjct: 458 IIK 460
>Y10931-1|CAA71861.1| 1142|Homo sapiens symplekin protein.
Length = 1142
Score = 33.1 bits (72), Expect = 0.90
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +3
Query: 297 SLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALVS---PNLKLCCLKAL 440
SLA +R +F+S+++QA ++H++L P K+ VS NLKL L L
Sbjct: 127 SLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVL 177
>U49240-1|AAC50667.1| 1142|Homo sapiens symplekin protein.
Length = 1142
Score = 33.1 bits (72), Expect = 0.90
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +3
Query: 297 SLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALVS---PNLKLCCLKAL 440
SLA +R +F+S+++QA ++H++L P K+ VS NLKL L L
Sbjct: 127 SLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVL 177
>BC030214-1|AAH30214.1| 533|Homo sapiens SYMPK protein protein.
Length = 533
Score = 33.1 bits (72), Expect = 0.90
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +3
Query: 297 SLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALVS---PNLKLCCLKAL 440
SLA +R +F+S+++QA ++H++L P K+ VS NLKL L L
Sbjct: 259 SLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVL 309
>BC006567-1|AAH06567.1| 1142|Homo sapiens SYMPK protein protein.
Length = 1142
Score = 33.1 bits (72), Expect = 0.90
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +3
Query: 297 SLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALVS---PNLKLCCLKAL 440
SLA +R +F+S+++QA ++H++L P K+ VS NLKL L L
Sbjct: 127 SLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVL 177
>BC006536-1|AAH06536.1| 1142|Homo sapiens SYMPK protein protein.
Length = 1142
Score = 33.1 bits (72), Expect = 0.90
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +3
Query: 297 SLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALVS---PNLKLCCLKAL 440
SLA +R +F+S+++QA ++H++L P K+ VS NLKL L L
Sbjct: 127 SLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVL 177
>AB210010-1|BAE06092.1| 1073|Homo sapiens SYMPK variant protein
protein.
Length = 1073
Score = 33.1 bits (72), Expect = 0.90
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +3
Query: 297 SLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALVS---PNLKLCCLKAL 440
SLA +R +F+S+++QA ++H++L P K+ VS NLKL L L
Sbjct: 274 SLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVL 324
>AB209024-1|BAD92261.1| 686|Homo sapiens SYMPK protein variant
protein.
Length = 686
Score = 33.1 bits (72), Expect = 0.90
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +3
Query: 297 SLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALVS---PNLKLCCLKAL 440
SLA +R +F+S+++QA ++H++L P K+ VS NLKL L L
Sbjct: 272 SLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVL 322
>U48736-1|AAB03268.1| 496|Homo sapiens serine/threonine-protein
kinase PRP4h protein.
Length = 496
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 303 AIHSRNSSLFLS-KLLQASNSIHSSLNPDSLKALVSPN-LKLC 425
A+ S + LFL+ KLL+ N +H+ + PD++ S LKLC
Sbjct: 280 AVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLC 322
>BC034969-1|AAH34969.1| 1007|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog B (yeast) protein.
Length = 1007
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 303 AIHSRNSSLFLS-KLLQASNSIHSSLNPDSLKALVSPN-LKLC 425
A+ S + LFL+ KLL+ N +H+ + PD++ S LKLC
Sbjct: 791 AVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLC 833
>BC009844-1|AAH09844.1| 496|Homo sapiens PRPF4B protein protein.
Length = 496
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 303 AIHSRNSSLFLS-KLLQASNSIHSSLNPDSLKALVSPN-LKLC 425
A+ S + LFL+ KLL+ N +H+ + PD++ S LKLC
Sbjct: 280 AVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLC 322
>AY029347-1|AAK38155.1| 1007|Homo sapiens serine/threonine-protein
kinase protein.
Length = 1007
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 303 AIHSRNSSLFLS-KLLQASNSIHSSLNPDSLKALVSPN-LKLC 425
A+ S + LFL+ KLL+ N +H+ + PD++ S LKLC
Sbjct: 791 AVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLC 833
>AL138831-3|CAI20480.1| 1007|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog B (yeast) protein.
Length = 1007
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 303 AIHSRNSSLFLS-KLLQASNSIHSSLNPDSLKALVSPN-LKLC 425
A+ S + LFL+ KLL+ N +H+ + PD++ S LKLC
Sbjct: 791 AVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLC 833
>AL033383-1|CAI42121.1| 1007|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog B (yeast) protein.
Length = 1007
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 303 AIHSRNSSLFLS-KLLQASNSIHSSLNPDSLKALVSPN-LKLC 425
A+ S + LFL+ KLL+ N +H+ + PD++ S LKLC
Sbjct: 791 AVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLC 833
>AF283465-1|AAM19101.1| 1007|Homo sapiens PRP4 kinase protein.
Length = 1007
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 303 AIHSRNSSLFLS-KLLQASNSIHSSLNPDSLKALVSPN-LKLC 425
A+ S + LFL+ KLL+ N +H+ + PD++ S LKLC
Sbjct: 791 AVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLC 833
>AB011108-1|BAA25462.1| 1028|Homo sapiens KIAA0536 protein protein.
Length = 1028
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 303 AIHSRNSSLFLS-KLLQASNSIHSSLNPDSLKALVSPN-LKLC 425
A+ S + LFL+ KLL+ N +H+ + PD++ S LKLC
Sbjct: 812 AVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLC 854
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,440,670
Number of Sequences: 237096
Number of extensions: 2026578
Number of successful extensions: 4491
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4489
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -