Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f16r
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    90   1e-18
AF022980-12|AAG24186.1|  515|Caenorhabditis elegans Hypothetical...    29   2.2  
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    29   2.9  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    29   2.9  
U80027-3|AAC48131.1|  350|Caenorhabditis elegans Serpentine rece...    29   2.9  
AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    29   2.9  
AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.        28   5.1  
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr...    28   5.1  
AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess...    28   5.1  
AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess...    28   5.1  
U51999-6|AAV28361.1|  380|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 65/191 (34%), Positives = 102/191 (53%), Gaps = 2/191 (1%)
 Frame = -1

Query: 631 HGLSEEVHDKFRKMNENKYAMLVYNTLLKPKSAGXLLLKTKNPFDKPLLYADYYKDIEDL 452
           H L   VHD  R  N   +   V+   ++ +S G ++L+ K+P   P++  +Y ++  D 
Sbjct: 410 HFLPSTVHDDGRT-NGTCHGYQVHVGPMRSQSKGYIMLQAKDPRRAPIINPNYMEEDSDW 468

Query: 451 XTVIRAFKQHSLRLGETKAFKESGFKLEWIELDACKSFDKNSDEFLECIAREITFSLYHP 272
               +  +  S  L  +KAF E   K E      C+S D + D F+    +E   S YHP
Sbjct: 469 REFRKCIRV-SRELFASKAFDEFRGK-ELAPGPDCQS-DADIDRFV----KEKAASAYHP 521

Query: 271 TSTVKMGADGDPTSVVDTK-LRVRNVTGLRVMDASIMPSVIRGNTXAPSIMIGEKGADMI 95
           + T KMG++ D  +VV+ + + V     L+V+DAS+MPS++ GN  AP IM+ E+ AD+I
Sbjct: 522 SCTCKMGSENDKMAVVNPETMGVYGTENLKVVDASVMPSIVSGNLNAPVIMMAERAADLI 581

Query: 94  K-KHWLHPLTD 65
           K K  L P +D
Sbjct: 582 KHKKQLLPPSD 592


>AF022980-12|AAG24186.1|  515|Caenorhabditis elegans Hypothetical
           protein T03D3.1 protein.
          Length = 515

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -1

Query: 478 DYYKDIEDLXTVIRAFKQHSLRLGETKAFKESGFKLEWIELDACKSFDKNSDEFLECIAR 299
           DY+K  ++       F++    LGE + F ESG++L  I ++  K       EFL+    
Sbjct: 79  DYWK--KNANHFSNMFEKSPTPLGEFEIFHESGYQLCKIAINDLKLI-----EFLKSGKY 131

Query: 298 EITFSL-YHPTSTVKMGADGDPT 233
           +I FS  Y P   + M A G P+
Sbjct: 132 DIGFSSDYDPCGNILMTAAGIPS 154


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 631  HGLSEEVHDKFRKMNENKYAMLVYNTLLKPKSAGXLLLKTKNPFDKPLL 485
            H L  +     RK  +N  +  V   LL    A   L++ K PFDKPLL
Sbjct: 1754 HPLRVKFSSMCRKQGKNSMSRAVLRELLS-LPANSDLVRAKAPFDKPLL 1801


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 631  HGLSEEVHDKFRKMNENKYAMLVYNTLLKPKSAGXLLLKTKNPFDKPLL 485
            H L  +     RK  +N  +  V   LL    A   L++ K PFDKPLL
Sbjct: 1754 HPLRVKFSSMCRKQGKNSMSRAVLRELLS-LPANSDLVRAKAPFDKPLL 1801


>U80027-3|AAC48131.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein7 protein.
          Length = 350

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 249 APIFTVLVGWYNENVISLAI 308
           APIF + +GW+N NV ++A+
Sbjct: 272 APIFGIDIGWWNTNVSTIAL 291


>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 607 DKFRKMNENKYAMLVYNTLLKPKSAGXLLLKTKNPFDKPLLYADY 473
           D FR+   + +  LV+NT+   K A  +L K+K       LY D+
Sbjct: 577 DSFRRKKNSNFGWLVFNTVADCKKAHDVLSKSK--IQGKALYVDF 619


>AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical
           protein C46C11.2 protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +3

Query: 291 VISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALVSP 410
           +I LAI S    + +  L QAS  I +SL P SL  L++P
Sbjct: 289 IICLAILSMTGCVLMIGLAQASWLIFASLAPGSLHGLLNP 328


>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
            F15G9.4b protein.
          Length = 5198

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +2

Query: 95   DHVSSFLTDHDRRSXSITSDYGRHYTCVHYSEAGNVS 205
            D   + + ++D +  S+T++    Y+C+  +EAGN++
Sbjct: 3434 DSRHTIVNNYDLKINSVTTEDAGQYSCIAVNEAGNLT 3470


>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
            F15G9.4a protein.
          Length = 5175

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +2

Query: 95   DHVSSFLTDHDRRSXSITSDYGRHYTCVHYSEAGNVS 205
            D   + + ++D +  S+T++    Y+C+  +EAGN++
Sbjct: 3434 DSRHTIVNNYDLKINSVTTEDAGQYSCIAVNEAGNLT 3470


>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
            F15G9.4b protein.
          Length = 5198

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +2

Query: 95   DHVSSFLTDHDRRSXSITSDYGRHYTCVHYSEAGNVS 205
            D   + + ++D +  S+T++    Y+C+  +EAGN++
Sbjct: 3434 DSRHTIVNNYDLKINSVTTEDAGQYSCIAVNEAGNLT 3470


>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
            F15G9.4a protein.
          Length = 5175

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +2

Query: 95   DHVSSFLTDHDRRSXSITSDYGRHYTCVHYSEAGNVS 205
            D   + + ++D +  S+T++    Y+C+  +EAGN++
Sbjct: 3434 DSRHTIVNNYDLKINSVTTEDAGQYSCIAVNEAGNLT 3470


>U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 279 YNENVISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSL 392
           +N+  +S +     SSL L  LL++  S+ SSL P+SL
Sbjct: 256 FNQKEMSSSPFGMESSLGLDALLRSFPSMRSSLTPESL 293


>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
            precursor protein.
          Length = 5198

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +2

Query: 95   DHVSSFLTDHDRRSXSITSDYGRHYTCVHYSEAGNVS 205
            D   + + ++D +  S+T++    Y+C+  +EAGN++
Sbjct: 3434 DSRHTIVNNYDLKINSVTTEDAGQYSCIAVNEAGNLT 3470


>AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess
           protein 3, isoform a protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 279 YNENVISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSL 392
           +N+  +S +     SSL L  LL++  S+ SSL P+SL
Sbjct: 256 FNQKEMSSSPFGMESSLGLDALLRSFPSMRSSLTPESL 293


>AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess
           protein 3, isoform b protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 279 YNENVISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSL 392
           +N+  +S +     SSL L  LL++  S+ SSL P+SL
Sbjct: 284 FNQKEMSSSPFGMESSLGLDALLRSFPSMRSSLTPESL 321


>U51999-6|AAV28361.1|  380|Caenorhabditis elegans Hypothetical
           protein C43H6.1 protein.
          Length = 380

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 396 PSRNLDLSWNGLSWMPAKALIRTATN 319
           PS +LDL+  GL W   K L+  A N
Sbjct: 61  PSYDLDLNQRGLIWFLKKGLLEAALN 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,045,543
Number of Sequences: 27780
Number of extensions: 318268
Number of successful extensions: 874
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)