Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f13r
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   159   2e-40
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   154   5e-39
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.30 
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   2.8  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   2.8  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   3.7  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   3.7  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    24   8.6  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    24   8.6  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    24   8.6  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    24   8.6  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    24   8.6  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  159 bits (385), Expect = 2e-40
 Identities = 72/106 (67%), Positives = 88/106 (83%), Gaps = 1/106 (0%)
 Frame = -2

Query: 327 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 148
           MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60

Query: 147 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRD 13
            + +PKLY KL YCVSCAIHS+VVR RS++ RRIRT PP+  + RD
Sbjct: 61  EYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRD 106


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  154 bits (373), Expect = 5e-39
 Identities = 70/109 (64%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
 Frame = -2

Query: 327 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 148
           MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY 
Sbjct: 1   MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60

Query: 147 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR 4
            + +PK+Y KL YCVSCAIH++VVR RS++ RRIRT PP+  + RD  R
Sbjct: 61  EYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKR 109


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.30
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -2

Query: 246 RCVPKDKAIKKFVIRNIVEAAAVRDI 169
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +1

Query: 187 RFYDVPNHELFDGLVLWHAPRAVCASHGFNVTTSMLGASS 306
           + +DV + +L + + L   P+A+C  +  ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
          subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 80 LSGTDRRKTEESVLLPRVTSLGT 12
          ++  DR +TE SVL  RVT +G+
Sbjct: 1  MAAVDRSRTEISVLSDRVTDVGS 23


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 108 CVSCAIHSKVVRNRSKKDRRIRTPPKS 28
           C SC+   K   N+  + RR++  PKS
Sbjct: 142 CGSCSDSKKPQSNKKHRGRRVKHSPKS 168


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 271 FNVTTSMLGASSITAL---TSHVSNLRSGEQ 354
           FN+ TS   +SS+T+    +SH+SN  + ++
Sbjct: 100 FNILTSNFASSSVTSAPTQSSHISNFTNSQK 130


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -2

Query: 240 VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSK 61
           +PKDKA++    RN  +  A   I DA         KL A+L   V     SK  +  SK
Sbjct: 167 IPKDKAVENNHQRNAEKPVASDKITDA---------KLLARLER-VRAWKESKAKQEASK 216

Query: 60  K-DRRIRTPPK 31
           K + ++ T P+
Sbjct: 217 KEEHKLNTKPQ 227


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 48  IRTPPKSNFPRDMSR 4
           IRTP KS FP+D ++
Sbjct: 157 IRTPKKSYFPKDHAK 171


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 252  CARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 157
            C R  P  KA+    +RN +E A    I D +
Sbjct: 1214 CCRSSPMQKALMVQKVRNTLEKAVTLAIGDGA 1245


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = -1

Query: 112 LLRVMRHPQQSCQEQIEERQKNPYSSQ 32
           +  ++ HP++  Q+Q+E+ Q+  +S +
Sbjct: 421 IFNLLFHPEEVQQQQLEQMQQQQFSPE 447


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 333 RNMTRKRRNGGRAKHG 286
           R   R RR  GRAKHG
Sbjct: 378 REARRMRRRQGRAKHG 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,404,668
Number of Sequences: 5004
Number of extensions: 23774
Number of successful extensions: 59
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)