Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f11r
         (753 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.49 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.49 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.49 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.49 
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    25   0.86 
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    23   2.0  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   2.0  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.0  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    22   4.6  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    22   4.6  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    22   4.6  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    22   4.6  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    22   4.6  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.0  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   6.0  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 258 YIIYLFFISLYKCYIYFIISLIHL 329
           Y IY+F +S++KC ++F+  L  L
Sbjct: 296 YFIYMF-VSVWKCLLFFVSVLFIL 318


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 258 YIIYLFFISLYKCYIYFIISLIHL 329
           Y IY+F +S++KC ++F+  L  L
Sbjct: 296 YFIYMF-VSVWKCLLFFVSVLFIL 318


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 258 YIIYLFFISLYKCYIYFIISLIHL 329
           Y IY+F +S++KC ++F+  L  L
Sbjct: 296 YFIYMF-VSVWKCLLFFVSVLFIL 318


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 258 YIIYLFFISLYKCYIYFIISLIHL 329
           Y IY+F +S++KC ++F+  L  L
Sbjct: 296 YFIYMF-VSVWKCLLFFVSVLFIL 318


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 193 ITIELCVRYFNWFSSNSVSTTHI*YICFSFLYIN 294
           I ++ CV YFN     ++   HI  +C + +YI+
Sbjct: 142 IRLKNCVIYFNRIFGWNILFGHIFTVCRTLIYID 175


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -3

Query: 154 TLQFFVFIYQT-----KGVLQLVYILFKIYWYMQFDLYIEKNIFL 35
           TLQ  V+++       + +  +VYI+  I+WY    +    NIFL
Sbjct: 237 TLQILVYLHLAVMLGFQDIYMIVYIIVVIFWY---TVNASTNIFL 278


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -3

Query: 154 TLQFFVFIYQT-----KGVLQLVYILFKIYWYMQFDLYIEKNIFL 35
           TLQ  V+++       + +  +VYI+  I+WY    +    NIFL
Sbjct: 237 TLQILVYLHLAVMLGFQDIYMIVYIIVVIFWY---TVNASTNIFL 278


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 243 CFHNPYIIYLFFISLYKCYIYFIISLIHL 329
           C +  Y  ++  + +Y  Y  FII  +HL
Sbjct: 99  CTYYFYYAFIILLCVYYFYYAFIIFTVHL 127



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 171 MLFKSSRYYDRVMCEIL*LVFIQQCFHNPYIIYLFFI-SLYKCYIYFIISLIHL 329
           +LF    YY  V    L  ++   C    + ++L F+  +Y  +  FII  +HL
Sbjct: 127 LLFLLCIYYFVVPLFFLLCIYYFYCAFIIFTVHLLFLLCIYHFFCAFIIFTMHL 180



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 258 YIIYLFFISLYKCYIYFIISLIHL 329
           Y + +  + +Y  Y  FI+  +HL
Sbjct: 229 YCVLIILLCIYYFYYAFILFTVHL 252


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 76  YMQFDLYIEKNIFLINLKIDL 14
           + Q D +I+KNI  +NL   L
Sbjct: 130 FYQPDYFIDKNIVFVNLNYRL 150


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 76  YMQFDLYIEKNIFLINLKIDL 14
           + Q D +I+KNI  +NL   L
Sbjct: 130 FYQPDYFIDKNIVFVNLNYRL 150


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 76  YMQFDLYIEKNIFLINLKIDL 14
           + Q D +I+KNI  +NL   L
Sbjct: 130 FYQPDYFIDKNIVFVNLNYRL 150


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 76  YMQFDLYIEKNIFLINLKIDL 14
           + Q D +I+KNI  +NL   L
Sbjct: 130 FYQPDYFIDKNIVFVNLNYRL 150


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 76  YMQFDLYIEKNIFLINLKIDL 14
           + Q D +I+KNI  +NL   L
Sbjct: 130 FYQPDYFIDKNIVFVNLNYRL 150


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 234 IQQCFHNPYIIYLFFISLYKCYIYFIISLI 323
           +  C   PY+   F I + +  +Y+  +LI
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLI 219


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 234 IQQCFHNPYIIYLFFISLYKCYIYFIISLI 323
           +  C   PY+   F I + +  +Y+  +LI
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLI 219


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 234 IQQCFHNPYIIYLFFISLYKCYIYFIISLI 323
           +  C   PY+   F I + +  +Y+  +LI
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLI 219


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 234 IQQCFHNPYIIYLFFISLYKCYIYFIISLI 323
           +  C   PY+   F I + +  +Y+  +LI
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLI 219


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 234 IQQCFHNPYIIYLFFISLYKCYIYFIISLI 323
           +  C   PY+   F I + +  +Y+  +LI
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLI 219


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/56 (25%), Positives = 22/56 (39%)
 Frame = -1

Query: 225 VKVSHT*LYRNIVSF*KAFN*DVKHFSFLYLFIRQKECYN*YIYYLRYIGICNLIC 58
           +K+ H   YR      K F   +   + L   +    C+N Y+Y   +I     IC
Sbjct: 26  LKIYHKEKYRKFCRILKYFIIAIYVLTILTSSVTLHVCFNSYMYAFTHIFFFFAIC 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,604
Number of Sequences: 336
Number of extensions: 3749
Number of successful extensions: 26
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)