Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f11r
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    28   1.6  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   2.2  
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    27   3.8  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    26   6.6  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   8.8  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   8.8  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 537 TGSSLRTPRVWATRVSRCPNP--GRSGTCSCQSIV 439
           TGS+ RT RVW  R   C     G + T  C  IV
Sbjct: 461 TGSTDRTVRVWDLRTGECKQVFYGHTSTIRCIKIV 495


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 255 PYIIYLFFISLYKCYIYFIISLIHLDDVY*ILVVEGYSREPLTLYIASI 401
           PY  +L +I L+    +FII++   + VY +  +  +S E   LY+A I
Sbjct: 119 PYFPFLCWICLWSMIFHFIIAI--ANGVYFVKHITKFSCEIFGLYVAFI 165


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 637 IIQKIREELANLDQSEEVEQITKHF 563
           ++  + E++  L QSE VE I +HF
Sbjct: 4   VLNALEEKVVELQQSESVEVIKRHF 28


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 286 REMKNKYIIYGLWKH 242
           ++MK + IIYG WKH
Sbjct: 656 QQMKERKIIYGQWKH 670


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 667 QSLTPSLIDAIIQKIREELANLDQSEEVEQITKHFHNTLQHLKNR 533
           +SL  + ++ ++QK RE+L    Q ++  +  K+F + LQ  K +
Sbjct: 117 KSLDEADVEILVQKYREQLLKELQLQKSTEKGKNFESILQPQKRK 161


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 640 AIIQKIREELANLDQSEEVEQITKHFHNTLQH 545
           A+  KIRE   NL  ++  E+  KH  +T++H
Sbjct: 110 AVEAKIREAAKNLMVAQAKEKKGKHKQSTIEH 141


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 604  LDQSEEVEQITKHFHNTLQHLKNRIESPD 518
            L+Q  EV Q +++FH  L  L +R   PD
Sbjct: 1044 LEQLNEVLQKSENFHTQLVSLISRARDPD 1072


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,825
Number of Sequences: 5004
Number of extensions: 57786
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)