Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f11r
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0800 - 5988425-5988580,5988842-5988951,5990275-5990392,599...    30   1.7  
02_02_0737 - 13529180-13529543,13530661-13531178                       29   4.0  
11_06_0720 - 26617665-26617781,26617851-26617924,26618218-266183...    29   5.2  
08_02_1351 + 26318023-26318665,26319386-26319543,26320843-263209...    29   5.2  
11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610     28   6.9  
02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262...    28   9.2  

>06_01_0800 -
           5988425-5988580,5988842-5988951,5990275-5990392,
           5990649-5990723,5990856-5991030,5991160-5991425
          Length = 299

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
 Frame = -1

Query: 534 GSSLRTPR---VWATRVSRCPNP-GRSGTCSCQSIVMT*FGVLALVNTLY*RYRASKAHV 367
           GS  + P+   V+A+R+SR  +   ++ T +C  +     G++    T+Y     SKA V
Sbjct: 131 GSIYQAPQLCSVFASRISRAMHHISKAFTTACSKLEKIGHGMVQNRYTIYNSGNTSKAEV 190

Query: 366 STLQLL-VSNKHHQDV 322
           S LQ++   N H Q +
Sbjct: 191 SILQIISFKNWHFQQI 206


>02_02_0737 - 13529180-13529543,13530661-13531178
          Length = 293

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +1

Query: 469 PPRVRTA*DPRSPDSRGPETRSCSSDAAKCCGSVS*SAPLLRTDLSWPAPRVFSVLSRR 645
           PP+VR    PR   S  P + SC   AA      S + P      S  +P V  ++SRR
Sbjct: 85  PPQVRRPQPPRRHRSTAPSSSSCQFQAAAPSRPPS-ALPSPTASSSTSSPPVDKIISRR 142


>11_06_0720 -
           26617665-26617781,26617851-26617924,26618218-26618331,
           26619375-26619399,26619564-26619620,26620273-26622888
          Length = 1000

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 522 RTPRVWATRVSRCPNPGRSGT 460
           RTP  W T VS C   GR GT
Sbjct: 4   RTPSTWYTAVSGCVRCGRDGT 24


>08_02_1351 +
           26318023-26318665,26319386-26319543,26320843-26320930,
           26321953-26322185
          Length = 373

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 665 ESHAQPHRRDNTE--NTRGAGQLRSVRRSGADHETLPQHFAASEEQDRVS 522
           ES      R N E   T G G  RS  RS  D +   QH   +EE+D VS
Sbjct: 194 ESEMYGGHRINVEAIGTLGEGDSRSEIRSRGDRDMDNQHILQAEEKDVVS 243


>11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610
          Length = 913

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = -3

Query: 670 NQSLTPSLIDAIIQKIREELANLDQSEEVEQITKHFHNTLQHLKNRIESPDPESLGYE 497
           N S   SL+  +  ++++  +    SEE++++ +      Q + + I +P+P   G+E
Sbjct: 99  NPSGRTSLVCRVKHEVKKVQSRSSFSEEIQKLRRRLSEAQQRVISNIINPNPPPSGFE 156


>02_01_0365 +
           2621302-2621711,2622442-2622620,2623381-2623496,
           2623626-2623964,2624113-2624307,2624505-2624594,
           2625288-2625518,2625632-2625952
          Length = 626

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 496 PRSPDSRGPETRSCSSDAAKCCGSVS*SAPLLR 594
           PR PDS    T   S++ AKC  +   S+PL R
Sbjct: 40  PRKPDSPPKRTTRSSANLAKCIENKHHSSPLKR 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,215,415
Number of Sequences: 37544
Number of extensions: 329660
Number of successful extensions: 862
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)