Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12f11r
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81594-1|CAB04745.1|  908|Caenorhabditis elegans Hypothetical pr...    33   0.29 
Z66500-6|CAA91309.1|  318|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF164625-1|AAD47816.1|  944|Caenorhabditis elegans tandem-array-...    28   8.2  
AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array ...    28   8.2  

>Z81594-1|CAB04745.1|  908|Caenorhabditis elegans Hypothetical
           protein T20F10.1 protein.
          Length = 908

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 252 NPYIIYLFFISLYKCYIYFIISLIHLDDVY*ILVVEGYSREPLT-LYIASIVCS 410
           +P+I+ LFF       +YFI+  +   D+  +L+ +G   E L   YIA + C+
Sbjct: 559 SPWIVRLFFSFQDDACLYFIMEYVPGGDMMTLLIQKGIFEEDLARFYIAELACA 612


>Z66500-6|CAA91309.1|  318|Caenorhabditis elegans Hypothetical
           protein T05C12.8 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -2

Query: 671 QPESHAQPHRRDNTENTRGAGQLRSVRRSGADHETLPQHFAASEEQDRVSGPRESGL 501
           Q +  A P  R ++ + +      S   +  DH  LPQH ++S E     GP  SGL
Sbjct: 216 QTDRIAAPAVRSSSISNKPLSYQTSGNSNEEDHLRLPQH-SSSSESPPSEGPSNSGL 271


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 433 RHYDRLTRTSTGPPRVRTA*DPRSPDSRGPETRSCSSDAAKCCGSVS*SAPLLRTDLSWP 612
           +HY     +++ PP+   A  P+ P S     R+  + AA    + S  AP++      P
Sbjct: 212 KHYKIGASSTSAPPKTTAAGAPKRPSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRAP 271

Query: 613 APR 621
           +P+
Sbjct: 272 SPK 274


>AF164625-1|AAD47816.1|  944|Caenorhabditis elegans
            tandem-array-modifier protein protein.
          Length = 944

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 424  SKLRHYDRLTRTSTGPPRVRTA*DPRSPDSRGPETRSCSSDAAKCCGSVS*SAPLLRT 597
            +K R  DR  +T   P ++ T  +P  P  R P+ R  S+ ++   G  S SAP  R+
Sbjct: 886  NKRRRVDRKPKTEE-PEQMET--EPVDPVHRAPKRRGTSAASSSSNGMPSSSAPTTRS 940


>AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array
            expression modifierprotein 1 protein.
          Length = 944

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 424  SKLRHYDRLTRTSTGPPRVRTA*DPRSPDSRGPETRSCSSDAAKCCGSVS*SAPLLRT 597
            +K R  DR  +T   P ++ T  +P  P  R P+ R  S+ ++   G  S SAP  R+
Sbjct: 886  NKRRRVDRKPKTEE-PEQMET--EPVDPVHRAPKRRGTSAASSSSNGMPSSSAPTTRS 940


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,619,463
Number of Sequences: 27780
Number of extensions: 318914
Number of successful extensions: 1150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)