Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f11f
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0335 + 33211705-33211800,33211886-33211982,33212078-332122... 167 6e-42
12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159... 29 2.8
06_01_0364 + 2591861-2593285 29 2.8
04_04_0806 - 28186486-28186701,28187047-28187341,28189800-281899... 28 5.0
12_01_1011 + 10292709-10292765,10293003-10293156,10294062-102941... 27 8.7
11_06_0676 + 26152192-26152367,26152669-26152708,26152857-261529... 27 8.7
08_02_0894 + 22346027-22347925 27 8.7
03_05_1117 - 30526126-30526640,30527114-30527186,30527310-305278... 27 8.7
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 27 8.7
>03_06_0335 +
33211705-33211800,33211886-33211982,33212078-33212204,
33212953-33213138,33213702-33213789,33214028-33214084,
33214171-33214260,33214339-33214461,33215024-33215098,
33215169-33215228,33215464-33215580,33215854-33216093,
33216181-33216246,33216370-33216459,33216914-33217003,
33217309-33217398,33217702-33217770,33217841-33217921,
33218108-33218215,33218336-33218439,33218822-33218935,
33219018-33219231
Length = 793
Score = 167 bits (406), Expect = 6e-42
Identities = 84/155 (54%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
Frame = +2
Query: 140 EEQEKLLEEALNIVKVQAFQMKRCLDKSKLMDALKHASTMLGELRTSLLSPKSYYELYMA 319
+++E+ L E + V+ AF M R LD + L DALK+++ ML ELRTS LSP YY+LYM
Sbjct: 8 DDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHKYYDLYMR 67
Query: 320 ITDXXXXXXXXXXXXFQKGR-KVADLYELVQYAGNIVPRLYLLITVGLVYIKTNTNLRRD 496
D ++G V DLYELVQ+AGN++PRLYLL TVG VYIK+ +D
Sbjct: 68 AFDEMRKLEMFFREETRRGSCSVVDLYELVQHAGNVLPRLYLLCTVGSVYIKSKEAPAKD 127
Query: 497 LLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPD 601
+LKDLVEMCRG+QHPLRGLFLR+YL Q +R+ LPD
Sbjct: 128 VLKDLVEMCRGIQHPLRGLFLRSYLSQISRDKLPD 162
>12_02_0478 +
19514509-19514940,19515749-19515820,19515954-19515986,
19516169-19516830,19516905-19517045,19518634-19518830,
19518878-19518965,19518987-19519041,19519501-19519571,
19519709-19519763,19519881-19519896,19520286-19520361,
19521202-19521240,19521312-19521333
Length = 652
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 164 PPGVSPALRLETPGLSFGP 108
PPG+SP+ L++PGL F P
Sbjct: 124 PPGLSPSGLLDSPGLLFSP 142
>06_01_0364 + 2591861-2593285
Length = 474
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 188 EL*QCSRPPPGVSPALRLETPGLSFGP 108
EL + SRPPPG P L + L GP
Sbjct: 14 ELVRASRPPPGFPPVLAVSNLDLILGP 40
>04_04_0806 -
28186486-28186701,28187047-28187341,28189800-28189942,
28190041-28190095,28190181-28190223,28190411-28190486,
28190708-28190826,28190917-28191487
Length = 505
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 428 VQCSQHIGPVHKDLQPS 378
VQC H G VH+DL+PS
Sbjct: 365 VQCIHHEGIVHRDLKPS 381
>12_01_1011 +
10292709-10292765,10293003-10293156,10294062-10294183,
10294288-10294495,10294644-10294789,10294920-10295226,
10295666-10296117,10296388-10296678
Length = 578
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +2
Query: 44 EFSSNLQKNLIWFFNCIGLVTQAQMTN--QVSPVEEQEKLLEEALNIV 181
+F +NL+K+++ F N L+T ++T+ ++ P+ E+ L L I+
Sbjct: 238 QFVTNLEKSIVEFENAKVLITDQKITSIKEILPILEKTTQLRAPLFII 285
>11_06_0676 +
26152192-26152367,26152669-26152708,26152857-26152966,
26153886-26153934,26154157-26154206,26154606-26155150,
26155583-26155743,26156231-26156440,26156525-26156690,
26156765-26156869,26157465-26157760
Length = 635
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 95 GLVTQAQMTNQVSPVEEQEKLLEEALNIVKVQAFQMKRCLDKSKLMDALKHA 250
G T+ NQ++ VEE K L + ++ + F++K+ D D +KHA
Sbjct: 347 GCRTKWLKDNQINTVEEFVKALNKDEEKIRNECFKLKK--DNKLWKDTIKHA 396
>08_02_0894 + 22346027-22347925
Length = 632
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 362 PPEDTAPGDAVHLLLPYKAHNSSLVITVKFSIHPALLMHVS 240
PP+ PG VH L Y + SSL+ K ++ ++ S
Sbjct: 363 PPKTAVPGGTVHPLTRYVMNYSSLISDYKVTLSELIVSRPS 403
>03_05_1117 -
30526126-30526640,30527114-30527186,30527310-30527848,
30528215-30528332
Length = 414
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -1
Query: 475 CFDVDQSYCD*QVQSRYNVPSILDQFIKIC 386
C D+D YC + ++ N+ +++F++IC
Sbjct: 149 CIDLDMQYCCRRCDNKTNLMLHVEKFLEIC 178
>03_01_0614 +
4515515-4515540,4515988-4516209,4516681-4516768,
4517084-4517123,4517259-4517305,4517464-4517584,
4517931-4518091
Length = 234
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 467 IKTNTNLRRDLLKDLVEMCR-GVQHPLRGLFLRNYLLQCT 583
+KT NLR +L K+ V++ R ++ R L LRN QCT
Sbjct: 107 VKTQNNLRDELRKETVQLARENLEKEQRILELRN---QCT 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,511,155
Number of Sequences: 37544
Number of extensions: 352418
Number of successful extensions: 904
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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