Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12f11f
(601 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53332-5|AAK31535.2| 821|Caenorhabditis elegans Related to yeas... 192 1e-49
DQ178636-1|ABD75715.1| 826|Caenorhabditis elegans vacuolar prot... 185 2e-47
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z27079-3|CAA81590.1| 332|Caenorhabditis elegans Hypothetical pr... 28 4.4
X68384-1|CAA48455.1| 332|Caenorhabditis elegans protein ( C.ele... 28 4.4
S75262-1|AAC60520.1| 332|Caenorhabditis elegans p34cdc2 kinase ... 28 4.4
AF129109-1|AAD37119.1| 332|Caenorhabditis elegans CDK1 ortholog... 28 4.4
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 5.9
U32305-15|AAK18858.4| 567|Caenorhabditis elegans Hypothetical p... 28 5.9
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 28 5.9
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 28 5.9
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 28 5.9
U14634-2|AAA21560.2| 423|Caenorhabditis elegans Hypothetical pr... 27 7.7
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 27 7.7
>U53332-5|AAK31535.2| 821|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 35 protein.
Length = 821
Score = 192 bits (469), Expect = 1e-49
Identities = 90/154 (58%), Positives = 116/154 (75%), Gaps = 1/154 (0%)
Frame = +2
Query: 143 EQEKLLEEALNIVKVQAFQMKRCLDKSKLMDALKHASTMLGELRTSLLSPKSYYELYM-A 319
+QEK L++++ +VK ++F+MKRCLDK K MDALKHA ML E+RT+ LSPK YY LYM +
Sbjct: 10 DQEKFLDQSIRVVKAESFEMKRCLDKGKTMDALKHALQMLNEMRTAELSPKFYYRLYMDS 69
Query: 320 ITDXXXXXXXXXXXXFQKGRKVADLYELVQYAGNIVPRLYLLITVGLVYIKTNTNLRRDL 499
+ + Q+ K+ +LYE VQYA I+PRLYLL+T+G V+IK R+++
Sbjct: 70 MHELQCLEVNLVQEYAQEPAKLGNLYECVQYASAIIPRLYLLVTIGGVFIKCGLGSRKEI 129
Query: 500 LKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPD 601
LKDLVEMCRGVQHPLRGLFLRNYL+QCTR+VLPD
Sbjct: 130 LKDLVEMCRGVQHPLRGLFLRNYLMQCTRSVLPD 163
>DQ178636-1|ABD75715.1| 826|Caenorhabditis elegans vacuolar protein
sorting factor protein.
Length = 826
Score = 185 bits (450), Expect = 2e-47
Identities = 90/159 (56%), Positives = 116/159 (72%), Gaps = 6/159 (3%)
Frame = +2
Query: 143 EQEKLLEEALNIVKVQAFQMKRCL-----DKSKLMDALKHASTMLGELRTSLLSPKSYYE 307
+QEK L++++ +VK ++F+MKRCL DK K MDALKHA ML E+RT+ LSPK YY
Sbjct: 10 DQEKFLDQSIRVVKAESFEMKRCLMKRCLDKGKTMDALKHALQMLNEMRTAELSPKFYYR 69
Query: 308 LYM-AITDXXXXXXXXXXXXFQKGRKVADLYELVQYAGNIVPRLYLLITVGLVYIKTNTN 484
LYM ++ + Q+ K+ +LYE VQYA I+PRLYLL+T+G V+IK
Sbjct: 70 LYMDSMHELQCLEVNLVQEYAQEPAKLGNLYECVQYASAIIPRLYLLVTIGGVFIKCGLG 129
Query: 485 LRRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPD 601
R+++LKDLVEMCRGVQHPLRGLFLRNYL+QCTR+VLPD
Sbjct: 130 SRKEILKDLVEMCRGVQHPLRGLFLRNYLMQCTRSVLPD 168
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -2
Query: 531 TPRHISTRSFNRSLRRFVFVLM*TSPTVINRYNLGTMFPAYWTSS*RSATFL 376
T R+I + + R V +V+ R N+ PA+W S RS +FL
Sbjct: 148 TIRNIKVNTHKYKMERVVSTKKSDVDSVVTRLNIHLTNPAFWMSQDRSRSFL 199
>Z27079-3|CAA81590.1| 332|Caenorhabditis elegans Hypothetical
protein T05G5.3 protein.
Length = 332
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 427 YNVPSILDQFIKICNLPSLLELLQKIQLQVTQFICYCHIKLII 299
+++ +DQ K LP LE L+ Q+ Q +C+CH + +I
Sbjct: 103 FDLKRYMDQLGKDEYLP--LETLKSYTFQILQAMCFCHQRRVI 143
>X68384-1|CAA48455.1| 332|Caenorhabditis elegans protein (
C.elegans mRNA for p34cdc2 homologue. ).
Length = 332
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 427 YNVPSILDQFIKICNLPSLLELLQKIQLQVTQFICYCHIKLII 299
+++ +DQ K LP LE L+ Q+ Q +C+CH + +I
Sbjct: 103 FDLKRYMDQLGKDEYLP--LETLKSYTFQILQAMCFCHQRRVI 143
>S75262-1|AAC60520.1| 332|Caenorhabditis elegans p34cdc2 kinase
protein.
Length = 332
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 427 YNVPSILDQFIKICNLPSLLELLQKIQLQVTQFICYCHIKLII 299
+++ +DQ K LP LE L+ Q+ Q +C+CH + +I
Sbjct: 103 FDLKRYMDQLGKDEYLP--LETLKSYTFQILQAMCFCHQRRVI 143
>AF129109-1|AAD37119.1| 332|Caenorhabditis elegans CDK1 ortholog
protein.
Length = 332
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 427 YNVPSILDQFIKICNLPSLLELLQKIQLQVTQFICYCHIKLII 299
+++ +DQ K LP LE L+ Q+ Q +C+CH + +I
Sbjct: 103 FDLKRYMDQLGKDEYLP--LETLKSYTFQILQAMCFCHQRRVI 143
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.9 bits (59), Expect = 5.9
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Frame = +2
Query: 113 QMTNQVSPVEEQEKLLEEALNIVKVQAF-QMKRCLDKSK--LMDALKHASTMLGELRTSL 283
Q+ + S ++E ++ E N+V QAF Q + ++ L D + AS+ GE SL
Sbjct: 2916 QVEARYSGLDEPVQIRRE--NLVDAQAFFQWVKAAEEDLEWLSDRMMLASS--GESGDSL 2971
Query: 284 LSPKSYYELYMAITDXXXXXXXXXXXXFQKGRKVADLYELVQYAGNIVPRLYLLITVGLV 463
S S + + + Q+G+ D+ +A + ++ ++ ++
Sbjct: 2972 QSALSLQKKHATLEKELDTRQSAMNDTEQRGK---DMIRQRHFASTHIQKILDRLSSAML 3028
Query: 464 YIKTNTNLRRDLLKDLVE 517
+K + LRRDLL++ ++
Sbjct: 3029 TLKESCGLRRDLLQEAID 3046
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.9 bits (59), Expect = 5.9
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Frame = +2
Query: 113 QMTNQVSPVEEQEKLLEEALNIVKVQAF-QMKRCLDKSK--LMDALKHASTMLGELRTSL 283
Q+ + S ++E ++ E N+V QAF Q + ++ L D + AS+ GE SL
Sbjct: 2916 QVEARYSGLDEPVQIRRE--NLVDAQAFFQWVKAAEEDLEWLSDRMMLASS--GESGDSL 2971
Query: 284 LSPKSYYELYMAITDXXXXXXXXXXXXFQKGRKVADLYELVQYAGNIVPRLYLLITVGLV 463
S S + + + Q+G+ D+ +A + ++ ++ ++
Sbjct: 2972 QSALSLQKKHATLEKELDTRQSAMNDTEQRGK---DMIRQRHFASTHIQKILDRLSSAML 3028
Query: 464 YIKTNTNLRRDLLKDLVE 517
+K + LRRDLL++ ++
Sbjct: 3029 TLKESCGLRRDLLQEAID 3046
>U32305-15|AAK18858.4| 567|Caenorhabditis elegans Hypothetical
protein B0336.11a protein.
Length = 567
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 212 DIFSFEMPEL*QCSRPPPGVSPALRL 135
D F F M EL +C PPP P+ +L
Sbjct: 248 DTFKFTMDELAKCLPPPPPPKPSPKL 273
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -3
Query: 365 TPPEDTAPGD-AVHLLLPYKAHNSSLVITVKFSIHPALLMHVSGRPLI*ICRDIFSFEMP 189
TPP G +VHL PY+ ++ +++ P H++ P+ + +P
Sbjct: 553 TPPPPPPKGHPSVHLQTPYQHVQPQMIPATYYNLPP---QHMAPPPI--------TTSLP 601
Query: 188 EL*QCSRPPPGVSPALR 138
S+PPPG +P +
Sbjct: 602 PFCDFSQPPPGFTPTFK 618
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -3
Query: 365 TPPEDTAPGD-AVHLLLPYKAHNSSLVITVKFSIHPALLMHVSGRPLI*ICRDIFSFEMP 189
TPP G +VHL PY+ ++ +++ P H++ P+ + +P
Sbjct: 553 TPPPPPPKGHPSVHLQTPYQHVQPQMIPATYYNLPP---QHMAPPPI--------TTSLP 601
Query: 188 EL*QCSRPPPGVSPALR 138
S+PPPG +P +
Sbjct: 602 PFCDFSQPPPGFTPTFK 618
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 27.9 bits (59), Expect = 5.9
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Frame = +2
Query: 113 QMTNQVSPVEEQEKLLEEALNIVKVQAF-QMKRCLDKSK--LMDALKHASTMLGELRTSL 283
Q+ + S ++E ++ E N+V QAF Q + ++ L D + AS+ GE SL
Sbjct: 2916 QVEARYSGLDEPVQIRRE--NLVDAQAFFQWVKAAEEDLEWLSDRMMLASS--GESGDSL 2971
Query: 284 LSPKSYYELYMAITDXXXXXXXXXXXXFQKGRKVADLYELVQYAGNIVPRLYLLITVGLV 463
S S + + + Q+G+ D+ +A + ++ ++ ++
Sbjct: 2972 QSALSLQKKHATLEKELDTRQSAMNDTEQRGK---DMIRQRHFASTHIQKILDRLSSAML 3028
Query: 464 YIKTNTNLRRDLLKDLVE 517
+K + LRRDLL++ ++
Sbjct: 3029 TLKESCGLRRDLLQEAID 3046
>U14634-2|AAA21560.2| 423|Caenorhabditis elegans Hypothetical
protein T15B12.2 protein.
Length = 423
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 428 VQCSQHIGPVHKDLQP-SFPFGTPPED 351
V+ +G +H+DL+P + GTPP+D
Sbjct: 166 VEVMHEVGFIHRDLKPANICTGTPPQD 192
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 137 VEEQEKLLEEALNIVKVQAFQMKRCLDKSKLMDALKHASTMLGELRTSLLSPK 295
VEE EK+ E+ LN+ VQAF++++ + + +L +A+ L E LS K
Sbjct: 1192 VEELEKVQEQMLNL--VQAFEVEKASIRLEWNSSLSNANEKL-EAAEEALSQK 1241
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,302,615
Number of Sequences: 27780
Number of extensions: 315601
Number of successful extensions: 802
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -